SCN Proteipedia

Hg_chrom7_TN10mRNA_13874

Organism: Heterodera glycines Gene Locus: chr7:4540318-4551780 Feature type: polypeptide

Protein Sequence

Length: 1,791

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.831	1.298	0.802	0.597	0.642	1.761	0.911	1.535	0.794	1.094	0.482	1.314	0.791	0.913	1.379	1.835	1.19	0.914	0.429	0.46	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13092	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRVVPPDSIIRRRLS,RRLSSVNASRLQEARERLK	9-29	0.995	61-90	0.972	—	—	0.000	—	—	0.276	0.082	0.021	0.675	0.189	0.175	0.173	0.052	0.373	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002411	1.000	3.000	Hsc_gene_10726.t1;Hsc_gene_10726.t2;Hsc_gene_10726.t3	Hsc_gene_10726.t1;Hsc_gene_10726.t2;Hsc_gene_10726.t3	—	Q6DFF9.1 Mitogen-activated protein kinase-binding protein 1 [Xenopus laevis]	KAI1722877.1 mitogen-activated protein kinase-binding protein 1 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.927\|GO:0110165_0.925\|GO:0008150_0.902\|GO:0009987_0.861\|GO:0005622_0.808\|GO:0016020_0.687\|GO:0065007_0.656\|GO:0050789_0.641\|GO:0043226_0.632\|GO:0050794_0.630\|GO:0043227_0.577\|GO:0043229_0.577\|GO:0050896_0.563\|GO:0032501_0.552\|GO:0051716_0.535\|GO:0043231_0.505	IPR001680+73-114_84-113_122-163_125-163_129-172_166-203_327-362_368-411_381-420_472-510_515-560_519-560_564-606_633-670_672-714_717-756_718-755_724-758+\|IPR011047+546-758+\|IPR015943+42-264_274-438_456-612_613-774+\|IPR036322+52-602_179-415+\|IPR052779+20-1669+	SM00320+73-114_122-163_166-203_327-362_368-411_472-510_515-560_564-606_633-670_672-714_717-756+	PF00400+84-113_125-163_519-560_718-755+WD_domain,_G-beta_repeat	—	PTHR45589+20-1669+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-9;818-1708;1753-1791	2.000	10-817;1709-1752	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.950	194016.290	9.134	57.500	21.273	8.040	53.825	46.175	13.009	8.264	57.398

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	7353.363	29629.975	6398.541	4624.128	4992.570	6476.264	5206.551	9054.646	3056.059	4985.414	4158.547

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.440	-2.817	-0.360	—	0.390	-0.305	0.383	-0.658	—	—	—	—	—

No JSON data available for plots.

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