Hg_chrom7_TN10mRNA_13878
Organism: Heterodera glycines Gene Locus: chr7:4560232-4561712 Feature type: polypeptideProtein Sequence
Length: 213
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.583 | 1.419 | 0.427 | 1.781 | 0.548 | 0.361 | 0.782 | 0.235 | 0.939 | 1.459 | 1.138 | 1.105 | 1.304 | 0.451 | 0.192 | 1.274 | 1.308 | 0.925 | 0.722 | 1.381 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13096
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
40-61
|
0.683
|
— | — | — | — |
0.003
|
— | — |
0.241
|
0.724
|
0.363
|
0.252
|
0.219
|
0.113
|
0.078
|
0.046
|
0.250
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000191
|
7.000
|
4.000
|
Hsc_gene_10633.t1;Hsc_gene_10640.t1;Hsc_gene_10723.t2;Hsc_gene_10724.t2
|
Hsc_gene_10633.t1;Hsc_gene_10633.t2;Hsc_gene_10663.t1;Hsc_gene_10723.t1;Hsc_gene_10723.t2;Hsc_gene_10723.t3;Hsc_gene_23976.t1
|
— | — |
KAI1722427.1 tspO/MBR family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.937|GO:0005575_0.901|GO:0110165_0.897|GO:0009987_0.872|GO:0051179_0.775|GO:0006810_0.769|GO:0051234_0.769|GO:0003674_0.675|GO:0016020_0.663|GO:0005622_0.581|GO:0043226_0.552|GO:0071944_0.540|GO:0043227_0.537|GO:0071840_0.530|GO:0016043_0.527|GO:0005886_0.511|GO:0051641_0.510
|
IPR004307+9-164_18-161_69-154+|IPR038330+8-163+
|
— |
PF03073+18-161+TspO/MBR_family
|
— |
PTHR10057+9-164+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-213
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
22629.250
|
8.399
|
6.500
|
14.554
|
10.798
|
38.967
|
61.033
|
8.920
|
5.634
|
59.155
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
560.072
|
24.197
|
53.056
|
194.462
|
746.452
|
804.024
|
962.857
|
343.547
|
0.000
|
1277.093
|
729.767
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
2.870
|
1.985
|
1.910
|
— |
0.270
|
-1.339
|
1.632
|
-11.117
|
8.460
|
— | — | — |
No JSON data available for plots.