Hg_chrom7_TN10mRNA_13889
Organism: Heterodera glycines Gene Locus: chr7:4594864-4596704 Feature type: polypeptideProtein Sequence
Length: 132
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.233 | 0.826 | 1.306 | 0.253 | 0.971 | 1.082 | 1.515 | 1.01 | 0.307 | 1.377 | 1.337 | 0.421 | 1.457 | 2.783 | 0.649 | 0.497 | 1.263 | 0.0 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13106
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.867
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RSREARKDRNPPPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.746
|
0.145
|
0.046
|
0.417
|
0.110
|
0.021
|
0.065
|
0.003
|
0.059
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011150
|
1.000
|
1.000
|
Hsc_gene_10715.t1
|
Hsc_gene_10715.t1
|
— |
O45499.1 Small ribosomal subunit protein eS26 [Caenorhabditis elegans]
|
KAI3413861.1 40S ribosomal protein S26 [Globodera pallida]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.859|GO:0110165_0.847|GO:0005622_0.758|GO:0043226_0.674|GO:0043229_0.662|GO:0005737_0.624|GO:0043228_0.562|GO:0043232_0.556|GO:0005829_0.548|GO:0003674_0.519
|
IPR000892+1-105_1-116+|IPR038551+1-113+|IPR047864+73-80+
|
— |
PF01283+1-105+Ribosomal_protein_S26e
|
G3DSA:3.30.1740.20:FF:000001+1-114+40S_ribosomal_protein_S26
|
PTHR12538+1-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28;83-132
|
1.000
|
29-82
|
9cai_Aa
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.843
|
14705.030
|
11.568
|
24.000
|
31.818
|
7.576
|
48.485
|
51.515
|
25.758
|
6.061
|
55.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
7453.474
|
3186.152
|
5361.939
|
10368.824
|
10750.379
|
9018.198
|
4886.714
|
2644.599
|
9880.034
|
7867.619
|
8730.083
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
1.565
|
1.060
|
— |
-0.238
|
-0.875
|
-1.877
|
1.028
|
— | — | — | — | — |
No JSON data available for plots.