Hg_chrom7_TN10mRNA_13890
Organism: Heterodera glycines Gene Locus: chr7:4597533-4599144 Feature type: polypeptideProtein Sequence
Length: 197
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.767 | 1.299 | 0.646 | 1.75 | 0.508 | 0.39 | 1.148 | 2.538 | 1.354 | 0.96 | 0.615 | 0.597 | 2.397 | 0.683 | 1.658 | 1.45 | 0.499 | 0.923 | 0.781 | 0.299 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13107
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
RKSGGSRWRRRRRRGRI
|
10-50
|
1.000
|
78-101
|
0.998
|
— | — |
0.000
|
— | — |
0.029
|
0.101
|
0.010
|
0.093
|
0.207
|
0.226
|
0.251
|
0.026
|
0.734
|
0.268
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011151
|
1.000
|
1.000
|
Hsc_gene_10714.t1
|
Hsc_gene_10714.t1;Hsc_gene_10714.t2
|
— | — |
XP_001902466.1 RE49668p, putative [Brugia malayi];CDP98386.2 Bm2489 [Brugia malayi];VIO99025.1 RE49668p, putative [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030431|GO:0032222|GO:1903818
|
— |
IPR031424+52-168+
|
— |
PF17064+52-168+Quiver_family_u-PAR/Ly-6-like_domain
|
— |
PTHR38332+34-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-16
|
1.000
|
17-197
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.887
|
21795.980
|
9.537
|
16.000
|
23.858
|
15.736
|
44.162
|
55.838
|
17.259
|
6.599
|
53.299
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
266.097
|
176.861
|
542.970
|
208.494
|
74.666
|
103.768
|
137.661
|
618.452
|
58.084
|
422.035
|
266.056
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.389
|
— |
-1.272
|
-1.513
|
0.489
|
0.420
|
2.470
|
-2.023
|
— | — | — | — | — |
No JSON data available for plots.