SCN Proteipedia

Hg_chrom7_TN10mRNA_13891

Organism: Heterodera glycines Gene Locus: chr7:4599299-4602593 Feature type: polypeptide

Protein Sequence

Length: 874

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.905	0.772	1.331	0.71	1.316	1.32	0.749	1.373	1.398	1.129	0.659	1.548	1.017	0.814	1.448	0.834	0.994	0.971	0.264	0.639	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13108	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.792	0.238	0.008	0.424	0.071	0.061	0.059	0.015	0.046	0.019

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011152	1.000	1.000	Hsc_gene_10713.t1	Hsc_gene_10713.t1	—	Q61J08.1 DNA replication licensing factor mcm-6 [Caenorhabditis briggsae]	KAF7633841.1 DNA helicase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003678\|GO:0005524\|GO:0005634\|GO:0006260\|GO:0006270\|GO:0016887\|GO:0032508\|GO:0042555	GO:0008150_0.918\|GO:0005575_0.873\|GO:0009987_0.850\|GO:0110165_0.832\|GO:0016020_0.749\|GO:0008152_0.741\|GO:0005622_0.740\|GO:0044238_0.717\|GO:0043170_0.710\|GO:0044237_0.707\|GO:0009058_0.706\|GO:0044249_0.692\|GO:0009059_0.680\|GO:0043226_0.678\|GO:0006139_0.676\|GO:0043229_0.660\|GO:0090304_0.660\|GO:0034654_0.659\|GO:0141187_0.651\|GO:0016043_0.641\|GO:0071840_0.641\|GO:0043227_0.635\|GO:0006259_0.623\|GO:0071897_0.619\|GO:0006260_0.615\|GO:0043231_0.607\|GO:0032991_0.596\|GO:0006261_0.570\|GO:0005634_0.550\|GO:0006996_0.540	IPR001208+332-553_343-537_383-398_443-457_471-484_495-507_522-530+\|IPR003593+384-536+\|IPR008049+74-86_117-129_167-184_220-231_277-298+\|IPR012340+22-250_121-248+\|IPR018525+451-459+\|IPR027417+324-668_352-651+\|IPR027925+20-111+\|IPR031327+12-700_116-653+\|IPR033762+119-248+\|IPR041024+742-869+\|IPR041562+571-651+	SM00350+116-653+\|SM00382+384-536+	PF00493+332-553+MCM_P-loop_domain\|PF14551+20-111+MCM_N-terminal_domain\|PF17207+119-248+MCM_OB_domain\|PF17855+571-651+MCM_AAA-lid_domain\|PF18263+742-869+MCM6_C-terminal_winged-helix_domain	G3DSA:2.20.28.10:FF:000003+147-198+DNA_helicase\|G3DSA:3.40.50.300:FF:002469+327-657+Cell_division_control_protein_21	PTHR11630+12-700+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-9;660-874	1.000	10-659	8eam_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.662	97855.660	5.107	-21.000	29.405	8.924	49.771	50.229	14.188	15.217	49.314

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	darkorange	967.991	692.543	501.579	1461.267	2035.467	1227.935	3045.828	380.868	112.479	646.046	417.375

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.697	0.940	1.653	0.446	-0.714	1.322	-1.803	3.146	—	—	—	—	—

No JSON data available for plots.

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