SCN Proteipedia

Hg_chrom7_TN10mRNA_13892

Organism: Heterodera glycines Gene Locus: chr7:4603088-4607284 Feature type: polypeptide

Protein Sequence

Length: 1,000

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.244	0.698	0.8	0.138	1.183	2.769	0.548	1.5	0.689	0.77	0.742	1.294	0.611	2.538	0.694	1.0	1.0	0.682	0.308	0.971	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13109	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.550

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKR	—	—	—	—	—	—	0.000	—	—	0.932	0.119	0.018	0.265	0.109	0.086	0.059	0.009	0.056	0.060

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011153	1.000	1.000	Hsc_gene_10712.t1	Hsc_gene_10712.t1	—	Q8TAQ2.1 SWI/SNF complex subunit SMARCC2 [Homo sapiens]	KAF7631204.1 SWI/SNF complex subunit SMARCC2 [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.938\|GO:0110165_0.934\|GO:0008150_0.926\|GO:0005622_0.886\|GO:0065007_0.885\|GO:0050789_0.883\|GO:0009987_0.860\|GO:0016020_0.851\|GO:0050794_0.843\|GO:0043226_0.838\|GO:0043229_0.809\|GO:0043227_0.743\|GO:0008152_0.740\|GO:0019222_0.740\|GO:0031323_0.740\|GO:0044237_0.740\|GO:0044238_0.734\|GO:0080090_0.734\|GO:0043170_0.727\|GO:0060255_0.727\|GO:0043231_0.711\|GO:0009058_0.705\|GO:0009889_0.705\|GO:0031326_0.705\|GO:0044249_0.705\|GO:0009059_0.703\|GO:0010467_0.703\|GO:0010468_0.703\|GO:0010556_0.703\|GO:0006139_0.701\|GO:0019219_0.701\|GO:0005634_0.695\|GO:0016070_0.686\|GO:0051252_0.686\|GO:0090304_0.686\|GO:0032774_0.680\|GO:0034654_0.680\|GO:0141187_0.680\|GO:0006351_0.674\|GO:0006355_0.674\|GO:2001141_0.674\|GO:0016043_0.644\|GO:0071840_0.644\|GO:0043228_0.643\|GO:0043232_0.643\|GO:0048518_0.633\|GO:0048522_0.628\|GO:0032991_0.610\|GO:0009893_0.582\|GO:0010604_0.582\|GO:0031325_0.566\|GO:0003674_0.557\|GO:0005488_0.557\|GO:0009891_0.556\|GO:0031328_0.553\|GO:0010557_0.550	IPR001005+300-348_303-345_304-346_320-345+\|IPR007526+89-186_99-177+\|IPR009057+85-188_301-351+\|IPR017884+299-350+\|IPR032448+386-443+\|IPR032451+524-605+\|IPR036388+95-182+	SM00717+300-348+	PF00249+303-345+Myb-like_DNA-binding_domain\|PF04433+99-177+SWIRM_domain\|PF16495+524-605+SWIRM-associated_region_1\|PF16498+386-443+SWIRM-associated_domain_at_the_C-terminal	G3DSA:1.10.10.10:FF:000020+95-182+SWI/SNF_complex_subunit_SMARCC2_isoform_c\|G3DSA:1.10.10.60:FF:000014+299-350+SWI/SNF_complex_subunit_SMARCC2_isoform_C	PTHR12802+108-753+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-45;185-323;396-1000	2.000	46-184;324-395	7y8r_O	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.678	109612.920	5.436	-17.000	22.800	8.900	49.700	50.300	11.300	11.500	53.900

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1762.952	3273.166	1450.174	1514.913	1611.253	1601.286	2551.144	1109.673	2238.200	1117.413	1597.750

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.403	-1.248	0.171	—	—	0.682	-0.633	1.342	—	—	—	—	—

No JSON data available for plots.

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