Hg_chrom7_TN10mRNA_13893
Organism: Heterodera glycines Gene Locus: chr7:4607437-4608503 Feature type: polypeptideProtein Sequence
Length: 245
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.187 | 1.139 | 1.41 | 0.281 | 1.361 | 0.837 | 0.486 | 2.245 | 0.635 | 1.986 | 0.557 | 1.921 | 0.567 | 0.942 | 1.749 | 0.816 | 0.468 | 0.928 | 0.314 | 0.36 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13110
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.680
|
0.132
|
0.024
|
0.426
|
0.036
|
0.184
|
0.114
|
0.003
|
0.060
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011154
|
1.000
|
1.000
|
Hsc_gene_10711.t1
|
Hsc_gene_10711.t1
|
— | — |
KAF7633838.1 DNA replication complex GINS protein SLD5 [Meloidogyne graminicola]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006261
|
GO:0008150_0.936|GO:0009987_0.883|GO:0005575_0.769|GO:0110165_0.765|GO:0005622_0.746|GO:0016020_0.710|GO:0043226_0.688|GO:0043229_0.670|GO:0043227_0.649|GO:0043231_0.635|GO:0008152_0.547|GO:0005634_0.546|GO:0009058_0.536|GO:0044238_0.535|GO:0044237_0.527|GO:0043170_0.518|GO:0044249_0.509|GO:0009059_0.501
|
IPR008591+6-245_10-245+|IPR036224+31-182+
|
— | — | — |
PTHR21206+10-245+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28
|
1.000
|
29-245
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
27583.360
|
5.950
|
-3.500
|
32.653
|
8.163
|
49.388
|
50.612
|
16.735
|
15.918
|
47.347
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkorange
|
302.899
|
369.556
|
323.137
|
420.891
|
528.406
|
435.730
|
548.653
|
290.352
|
84.007
|
168.409
|
132.236
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.422
|
— |
0.489
|
0.296
|
-0.263
|
0.343
|
-0.691
|
1.061
|
— | — | — | — | — |
No JSON data available for plots.