SCN Proteipedia

Hg_chrom7_TN10mRNA_13895

Organism: Heterodera glycines Gene Locus: chr7:4625528-4633587 Feature type: polypeptide

Protein Sequence

Length: 1,372

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.881	1.322	0.848	0.98	1.093	0.991	0.59	1.312	0.81	1.95	0.652	1.629	1.356	0.911	1.354	1.385	0.645	0.618	0.673	0.364	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13112	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRRP,LGEV,RRKRR,RGRKLRK	—	—	—	—	—	—	0.207	—	—	0.177	0.047	0.011	0.291	0.249	0.449	0.337	0.029	0.772	0.139

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011156	1.000	1.000	Hsc_gene_10709.t1	Hsc_gene_10709.t1	—	Q7KIN0.1 Toll-like receptor 7 [Drosophila melanogaster]	KAH7721775.1 Protein TOL-1, partial [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0007165	GO:0005575_0.881\|GO:0110165_0.881\|GO:0008150_0.865\|GO:0071944_0.765\|GO:0009987_0.764\|GO:0016020_0.757\|GO:0032501_0.731\|GO:0005886_0.728\|GO:0032502_0.654\|GO:0048856_0.654\|GO:0065007_0.644\|GO:0050789_0.623\|GO:0007275_0.614\|GO:0050794_0.608\|GO:0003674_0.607\|GO:0050896_0.599\|GO:0051716_0.555\|GO:0005488_0.551\|GO:0048731_0.543\|GO:0007154_0.524\|GO:0023052_0.522\|GO:0005515_0.509\|GO:0030154_0.505\|GO:0048869_0.505\|GO:0007165_0.502	IPR000157+1184-1328+\|IPR001611+177-238_259-313_302-323_405-464_525-584_573-595_881-940_905-926+\|IPR003591+201-224_225-247_252-275_276-299_300-326_379-401_403-426_427-450_451-474_499-522_523-546_547-570_571-594_666-688_694-717_880-902_903-926_927-950_951-973+\|IPR032675+77-366_370-495_496-801_812-1013+\|IPR035897+1184-1329_1185-1330+\|IPR050333+380-556+	SM00364+225-243_300-319_320-339_378-397_665-683_951-970+\|SM00368+378-405_643-670_927-953+\|SM00369+201-224_225-247_252-275_276-299_300-326_379-401_403-426_427-450_451-474_499-522_523-546_547-570_571-594_666-688_694-717_880-902_903-926_927-950_951-973+	PF13855+177-238_259-313_405-464_525-584_881-940+Leucine_rich_repeat	—	PTHR45712+380-556+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1372	8rex_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.766	153524.980	7.191	14.000	24.781	9.621	47.959	52.041	13.557	11.224	48.178

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1951.754	5151.333	3698.211	1966.978	1594.760	1737.284	1649.108	2803.715	503.815	1185.541	893.373

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.707	-1.526	-0.803	-0.334	—	—	0.590	-0.626	—	—	—	—	—

No JSON data available for plots.

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