SCN Proteipedia

Hg_chrom7_TN10mRNA_13896

Organism: Heterodera glycines Gene Locus: chr7:4639131-4640153 Feature type: polypeptide

Protein Sequence

Length: 153

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.292	0.608	0.238	0.902	0.327	1.341	0.7	1.307	1.452	1.59	0.693	2.691	1.452	0.251	0.667	0.934	1.179	0.792	5.028	1.153	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13113	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-Not_Clustered	0.901

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	2-44	0.930	—	—	—	—	0.000	—	—	0.190	0.222	0.007	0.133	0.265	0.444	0.289	0.003	0.498	0.139

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011157	1.000	1.000	Hsc_gene_10707.t1	Hsc_gene_10707.t1;Hsc_gene_10707.t2	—	Q21642.2 Heme transporter hrg-1 [Caenorhabditis elegans]	KAH7725374.1 Protein HRG-1 [Aphelenchus avenae]	No	0.220

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0015232\|GO:0015886	GO:0008150_0.943\|GO:0005575_0.903\|GO:0110165_0.901\|GO:0009987_0.889\|GO:0071944_0.871\|GO:0005886_0.859\|GO:0016020_0.859\|GO:0003674_0.833\|GO:0006810_0.827\|GO:0051179_0.827\|GO:0051234_0.827\|GO:0055085_0.777\|GO:0005622_0.747\|GO:0005737_0.747\|GO:0071705_0.733\|GO:0006811_0.730\|GO:0005215_0.726\|GO:0022857_0.726\|GO:0005488_0.723\|GO:0005773_0.721\|GO:0043226_0.721\|GO:0043227_0.721\|GO:0043229_0.721\|GO:0043231_0.721\|GO:0012505_0.709\|GO:0006812_0.705\|GO:0030001_0.701\|GO:0000041_0.684\|GO:0006826_0.676\|GO:0015886_0.670\|GO:1901678_0.670\|GO:0031090_0.668\|GO:0097159_0.657\|GO:0046906_0.654\|GO:0015232_0.650\|GO:0020037_0.650\|GO:0031982_0.608\|GO:0098588_0.604\|GO:0097708_0.582\|GO:0031410_0.580\|GO:0000323_0.573\|GO:0005764_0.563\|GO:0005774_0.559\|GO:0012506_0.554\|GO:0098852_0.554\|GO:0005768_0.553\|GO:0030659_0.553\|GO:0005765_0.551\|GO:0010008_0.546	IPR026218+5-152_7-26_30-46_73-124_108-123_123-136+	—	PF16954+73-124+Haem-transporter,_endosomal/lysosomal,_haem-responsive_gene	—	PTHR31525+5-152+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-153	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.584	17553.730	9.703	9.000	13.725	18.301	35.294	64.706	10.458	3.268	43.791

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	turquoise	282.054	235.939	160.219	113.344	137.780	433.752	493.742	485.669	76.906	403.640	263.611

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.789	-1.195	-0.390	0.249	1.670	—	—	—	—	—	—	—	—

No JSON data available for plots.

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