Hg_chrom7_TN10mRNA_13897
Organism: Heterodera glycines Gene Locus: chr7:4641153-4644628 Feature type: polypeptideProtein Sequence
Length: 642
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.159 | 0.797 | 0.85 | 0.806 | 0.415 | 0.959 | 0.834 | 0.779 | 1.627 | 1.516 | 0.378 | 1.649 | 1.904 | 0.869 | 0.699 | 1.224 | 1.021 | 0.968 | 1.318 | 0.962 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13114
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.061
|
0.163
|
0.018
|
0.160
|
0.341
|
0.760
|
0.560
|
0.030
|
0.531
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011158
|
1.000
|
1.000
|
Hsc_gene_10705.t1
|
Hsc_gene_10705.t1
|
— |
Q22397.2 Amino acid transporter protein 6 [Caenorhabditis elegans]
|
KAH7718516.1 AAT-5 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.864|GO:0005575_0.827|GO:0110165_0.827|GO:0016020_0.792|GO:0009987_0.788|GO:0005886_0.781|GO:0006810_0.781|GO:0051179_0.781|GO:0051234_0.781|GO:0071944_0.781|GO:0055085_0.734|GO:0003674_0.705|GO:0005215_0.599|GO:0022857_0.599|GO:0003333_0.552|GO:0006865_0.552|GO:0071705_0.532
|
IPR002293+115-520+|IPR050598+112-548+
|
— |
PF13520+115-520+Amino_acid_permease
|
G3DSA:1.20.1740.10:FF:000058+109-548+Amino_Acid_Transporter
|
PTHR11785+112-548+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-47
|
1.000
|
48-642
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.659
|
70136.300
|
5.992
|
-3.000
|
14.642
|
13.396
|
36.604
|
63.396
|
7.477
|
7.165
|
53.115
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
greenyellow
|
1090.569
|
447.565
|
1852.073
|
814.388
|
258.793
|
302.658
|
392.529
|
2481.138
|
381.958
|
2028.841
|
1323.034
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.820
|
0.726
|
-1.077
|
-1.685
|
— |
0.384
|
2.942
|
-2.524
|
-2.526
|
— |
-2.769
|
— | — |
No JSON data available for plots.