Hg_chrom7_TN10mRNA_13899
Organism: Heterodera glycines Gene Locus: chr7:4651723-4656233 Feature type: polypeptideProtein Sequence
Length: 630
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.738 | 1.034 | 0.895 | 0.712 | 0.979 | 1.099 | 0.586 | 1.508 | 1.27 | 1.158 | 0.746 | 1.307 | 1.72 | 1.038 | 1.62 | 1.497 | 1.067 | 0.625 | 0.488 | 0.42 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13116
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
chloroplast
|
— | — | — |
98-121
|
1.000
|
— |
0.718
|
0.068
|
0.000
|
— |
0.256
|
0.647
|
0.599
|
0.212
|
0.068
|
0.073
|
0.216
|
0.118
|
0.079
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011160
|
1.000
|
1.000
|
Hsc_gene_10703.t1
|
Hsc_gene_10703.t1
|
— |
Q1HCL7.1 NAD kinase 2, mitochondrial [Rattus norvegicus]
|
KAI1726280.1 ATP-NAD kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003951|GO:0006741|GO:0019674
|
GO:0005575_0.923|GO:0110165_0.923|GO:0005622_0.856|GO:0016020_0.810|GO:0043226_0.755|GO:0043229_0.754|GO:0005737_0.748|GO:0043227_0.716|GO:0043231_0.712|GO:0008150_0.654|GO:0009987_0.611|GO:0003674_0.554|GO:0005488_0.509
|
IPR002504+280-356+|IPR016064+263-506+|IPR017437+447-613+|IPR017438+188-403+
|
— |
PF01513+280-356+ATP-NAD_kinase_N-terminal_domain
|
— |
PTHR13158+186-625+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
379-454
|
2.000
|
1-378;455-630
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
71104.740
|
9.129
|
22.500
|
26.667
|
11.270
|
52.381
|
47.619
|
15.873
|
10.794
|
49.206
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
yellow
|
1851.773
|
550.596
|
1443.736
|
1701.518
|
1897.491
|
2454.399
|
2303.167
|
2752.850
|
1288.705
|
2221.070
|
1821.485
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.163
|
1.490
|
0.344
|
0.125
|
0.386
|
— | — | — | — | — | — | — | — |