Hg_chrom7_TN10mRNA_13902
Organism: Heterodera glycines Gene Locus: chr7:4658910-4662797 Feature type: polypeptideProtein Sequence
Length: 705
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.726 | 1.319 | 1.057 | 0.685 | 0.993 | 1.382 | 0.608 | 1.348 | 0.977 | 1.131 | 0.795 | 1.085 | 1.891 | 0.873 | 1.447 | 1.155 | 0.791 | 0.838 | 1.309 | 0.793 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13119
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.783
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RKSLRRLKDACFPRIRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.344
|
0.149
|
0.015
|
0.585
|
0.138
|
0.412
|
0.181
|
0.029
|
0.263
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011163
|
1.000
|
1.000
|
Hsc_gene_10700.t1
|
Hsc_gene_10700.t1
|
— |
Q13496.2 Myotubularin [Homo sapiens]
|
KAI1711697.1 myotubularin-like phosphatase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016311
|
GO:0005575_0.909|GO:0110165_0.899|GO:0008150_0.885|GO:0005622_0.840|GO:0003674_0.836|GO:0009987_0.834|GO:0005737_0.717|GO:0065007_0.688|GO:0050789_0.673|GO:0050794_0.659|GO:0003824_0.614|GO:0008152_0.604|GO:0016020_0.602|GO:0044237_0.580|GO:0044238_0.579|GO:0016787_0.551
|
IPR010569+207-538_213-591+|IPR011993+82-191+|IPR016130+425-435+|IPR029021+209-594+|IPR030564+78-692+
|
— |
PF06602+207-538+Myotubularin-like_phosphatase_domain
|
— |
PTHR10807+78-692+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
606-705
|
1.000
|
1-605
|
4y7i_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
81039.560
|
8.031
|
13.500
|
26.809
|
13.901
|
50.780
|
49.220
|
15.035
|
11.773
|
47.801
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
586.895
|
1050.061
|
773.011
|
728.673
|
727.315
|
699.583
|
843.508
|
699.552
|
340.675
|
241.520
|
284.015
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.670
|
-0.664
|
— | — | — |
0.279
|
— |
0.410
|
— | — | — | — | — |
No JSON data available for plots.