Hg_chrom7_TN10mRNA_13903
Organism: Heterodera glycines Gene Locus: chr7:4664224-4666182 Feature type: polypeptideProtein Sequence
Length: 463
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.929 | 0.603 | 0.785 | 0.447 | 0.504 | 1.385 | 0.823 | 2.268 | 0.912 | 1.401 | 0.524 | 1.016 | 2.1 | 0.955 | 1.146 | 1.512 | 0.779 | 1.08 | 0.665 | 0.826 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13120
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— | — |
30-61
|
0.963
|
15-54
|
0.922
|
— | — |
0.000
|
— | — |
0.182
|
0.602
|
0.075
|
0.281
|
0.339
|
0.184
|
0.176
|
0.669
|
0.132
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004566
|
1.000
|
2.000
|
Hsc_gene_10699.t1;Hsc_gene_10699.t2
|
Hsc_gene_10699.t1;Hsc_gene_10699.t2
|
— |
Q63ZR7.1 Solute carrier family 25 member 46-B [Xenopus laevis]
|
KAI6234441.1 Solute carrier family 25 member 46 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005741|GO:0090149
|
GO:0008150_0.907|GO:0005575_0.880|GO:0110165_0.873|GO:0016020_0.830|GO:0009987_0.816|GO:0005622_0.710|GO:0043226_0.668|GO:0043229_0.659|GO:0043227_0.645|GO:0043231_0.641|GO:0005737_0.639|GO:0003674_0.557|GO:0051179_0.506
|
IPR018108+226-330_228-329+|IPR023395+15-324_186-364+|IPR039158+14-329+
|
— |
PF00153+228-329+Mitochondrial_carrier_protein
|
— |
PTHR21252+14-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
392-463
|
1.000
|
1-391
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
51410.700
|
9.233
|
18.500
|
20.950
|
15.767
|
44.276
|
55.724
|
13.607
|
7.343
|
50.540
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1034.249
|
1462.591
|
1034.553
|
1284.802
|
1464.303
|
1225.924
|
1828.166
|
969.773
|
593.285
|
603.585
|
599.171
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.729
|
-0.324
|
0.421
|
0.157
|
-0.242
|
0.587
|
-0.443
|
1.057
|
— | — | — | — | — |
No JSON data available for plots.