SCN Proteipedia

Hg_chrom7_TN10mRNA_13905

Organism: Heterodera glycines Gene Locus: chr7:4683025-4687045 Feature type: polypeptide

Protein Sequence

Length: 692

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.26	1.143	0.788	0.648	0.819	2.964	0.723	2.023	0.482	0.859	0.591	1.955	1.124	1.028	0.649	1.672	0.734	0.613	0.445	0.68	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13122	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-Not_Clustered	0.834

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RPRKKVKK	—	—	—	—	—	—	0.000	—	—	0.888	0.135	0.006	0.411	0.072	0.044	0.058	0.015	0.051	0.030

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011165	1.000	1.000	Hsc_gene_10697.t1	Hsc_gene_10697.t1	—	Q8T3B9.1 Transcription factor sem-2 [Caenorhabditis elegans]	KAF7627279.1 HMG box domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	—	GO:0008150_0.889\|GO:0032502_0.767\|GO:0005575_0.762\|GO:0048856_0.748\|GO:0032501_0.740\|GO:0009987_0.723\|GO:0007275_0.702\|GO:0110165_0.695\|GO:0005622_0.658\|GO:0003674_0.656\|GO:0005488_0.656\|GO:0065007_0.653\|GO:0050789_0.647\|GO:0050794_0.645\|GO:0043226_0.628\|GO:0043229_0.618\|GO:0016020_0.617\|GO:0003676_0.595\|GO:0097159_0.595\|GO:0048731_0.594\|GO:0007399_0.557\|GO:0043227_0.550\|GO:0003677_0.544\|GO:0005634_0.526\|GO:0043231_0.526\|GO:0043565_0.520\|GO:0048518_0.513\|GO:0048522_0.513\|GO:0030154_0.509\|GO:0048869_0.509	IPR009071+173-243_174-242+\|IPR036910+163-246_169-249+\|IPR050140+134-627+	SM00398+173-243+	PF00505+174-242+HMG_(high_mobility_group)_box	G3DSA:1.10.30.10:FF:000003+170-250+Putative_transcription_factor_SOX-6	PTHR10270+134-627+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3;112-296;401-506;580-692	3.000	4-111;297-400;507-579	3u2b_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.747	75522.330	6.441	-1.000	20.376	10.983	53.035	46.965	11.127	9.249	53.613

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	steelblue	392.842	430.582	395.943	211.168	354.477	594.236	524.318	301.435	679.595	154.428	379.499

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.349	-1.165	-0.799	0.714	0.760	—	-1.091	0.945	—	—	—	—	—

No JSON data available for plots.

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