Hg_chrom7_TN10mRNA_13910
Organism: Heterodera glycines Gene Locus: chr7:4704621-4707590 Feature type: polypeptideProtein Sequence
Length: 437
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.798 | 1.33 | 1.165 | 1.341 | 1.106 | 0.704 | 0.599 | 1.03 | 1.627 | 1.33 | 0.936 | 0.942 | 1.335 | 0.748 | 1.074 | 0.915 | 0.825 | 1.109 | 0.704 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13127
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.948
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.473
|
0.304
|
0.011
|
0.628
|
0.097
|
0.117
|
0.130
|
0.018
|
0.088
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011169
|
1.000
|
1.000
|
Hsc_gene_10692.t2
|
Hsc_gene_10692.t1;Hsc_gene_10692.t2
|
— |
Q19360.2 NEDD8-activating enzyme E1 catalytic subunit [Caenorhabditis elegans]
|
KAI3413832.1 regulator of flocculosin biosynthesis [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008641|GO:0019781|GO:0045116
|
GO:0008150_0.865|GO:0005575_0.703|GO:0003674_0.689|GO:0110165_0.656|GO:0008152_0.649|GO:0044238_0.622|GO:0003824_0.615|GO:0043170_0.593|GO:0005622_0.591|GO:0019538_0.522|GO:0016787_0.517
|
IPR000594+37-342+|IPR014929+352-436_354-434+|IPR023318+210-286+|IPR030468+48-345+|IPR033127+212-220+|IPR035985+36-423+|IPR045886+36-411+
|
SM01181+352-436+
|
PF00899+37-342+ThiF_family|PF08825+354-434+E2_binding_domain
|
G3DSA:1.10.10.520:FF:000001+211-286+NEDD8-activating_enzyme_E1_catalytic_subunit
|
PTHR10953+36-411+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-437
|
5ff5_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
48998.330
|
6.063
|
-2.500
|
26.545
|
9.840
|
46.453
|
53.547
|
13.501
|
13.043
|
50.572
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
2452.095
|
2725.175
|
1851.425
|
2240.253
|
2179.213
|
1883.918
|
1679.814
|
2639.129
|
2324.499
|
3284.942
|
2873.323
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.788
|
-0.420
|
0.384
|
— |
-0.196
|
-0.155
|
0.381
|
-0.509
|
— | — | — | — | — |
No JSON data available for plots.