Hg_chrom7_TN10mRNA_13913
Organism: Heterodera glycines Gene Locus: chr7:4716430-4717848 Feature type: polypeptideProtein Sequence
Length: 242
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.393 | 0.865 | 0.526 | 0.427 | 1.24 | 0.742 | 0.689 | 1.24 | 0.459 | 1.284 | 0.438 | 0.729 | 2.41 | 1.43 | 1.434 | 0.885 | 0.813 | 1.44 | 0.636 | 0.365 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13130
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— | — | — | — |
32-66
|
0.988
|
— | — |
0.000
|
— | — |
0.150
|
0.529
|
0.053
|
0.172
|
0.059
|
0.059
|
0.073
|
0.864
|
0.086
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011171
|
1.000
|
1.000
|
Hsc_gene_10689.t1
|
Hsc_gene_10689.t1
|
— |
Q9NA25.1 Peroxisomal coenzyme A diphosphatase ndx-8 [Caenorhabditis elegans]
|
KAH7727639.1 Protein NDX-8 [Aphelenchus avenae]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000287|GO:0009132|GO:0010945|GO:0016818|GO:0030145
|
GO:0005575_0.776|GO:0110165_0.767|GO:0008150_0.691|GO:0003674_0.685|GO:0005622_0.653|GO:0009987_0.617|GO:0016020_0.604|GO:0043226_0.600|GO:0043229_0.589|GO:0005737_0.576|GO:0003824_0.511|GO:0043227_0.506
|
IPR000059+52-72+|IPR000086+16-182_50-146+|IPR015797+48-150+|IPR045121+18-150_18-205+
|
— |
PF00293+50-146+NUDIX_domain
|
— |
PTHR12992+18-205+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-242
|
5qhh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
26678.530
|
7.042
|
2.000
|
22.727
|
13.223
|
40.496
|
59.504
|
12.397
|
10.331
|
53.719
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
69.343
|
8.306
|
23.303
|
124.370
|
122.858
|
98.759
|
115.235
|
36.910
|
0.514
|
104.338
|
59.842
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.266
|
3.772
|
2.517
|
— | — | — |
-1.533
|
1.786
|
-7.014
|
7.332
|
— | — | — |
No JSON data available for plots.