Hg_chrom7_TN10mRNA_13916
Organism: Heterodera glycines Gene Locus: chr7:4728779-4730044 Feature type: polypeptideProtein Sequence
Length: 230
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.961 | 1.314 | 1.502 | 0.9 | 0.942 | 1.784 | 0.673 | 1.522 | 0.87 | 0.588 | 1.054 | 2.302 | 0.604 | 0.669 | 0.887 | 1.429 | 1.212 | 0.922 | 0.0 | 0.384 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13133
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.545
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRPRRAAAAAHSQRKRRLE,KRFAGATCYKPIQVNHRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.973
|
0.066
|
0.033
|
0.167
|
0.007
|
0.021
|
0.015
|
0.020
|
0.034
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011173
|
1.000
|
1.000
|
Hsc_gene_10686.t1
|
Hsc_gene_10686.t1;Hsc_gene_10686.t2
|
— | — |
KAI3413827.1 hypothetical protein GPALN_016356 [Globodera pallida]
|
WP_090218185
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-171;219-230
|
1.000
|
172-218
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
25142.840
|
5.886
|
-2.500
|
28.261
|
6.522
|
58.261
|
41.739
|
14.348
|
13.913
|
57.391
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
767.342
|
547.137
|
451.367
|
587.390
|
1021.883
|
883.237
|
725.243
|
821.557
|
425.408
|
1148.883
|
838.822
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.509
|
— |
0.490
|
0.767
|
-0.196
|
-0.273
|
— | — | — | — | — | — | — |
No JSON data available for plots.