Hg_chrom7_TN10mRNA_13917
Organism: Heterodera glycines Gene Locus: chr7:4730114-4732597 Feature type: polypeptideProtein Sequence
Length: 517
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.652 | 1.17 | 1.02 | 0.4 | 1.547 | 1.19 | 0.345 | 1.451 | 1.418 | 1.307 | 0.821 | 1.82 | 1.289 | 0.67 | 1.303 | 0.939 | 0.92 | 0.879 | 1.339 | 1.195 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13134
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — |
11-33
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.748
|
0.212
|
0.007
|
0.566
|
0.061
|
0.230
|
0.145
|
0.006
|
0.061
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011174
|
1.000
|
1.000
|
Hsc_gene_10685.t1
|
Hsc_gene_10685.t1
|
— |
P34514.3 Anaphase-promoting complex subunit 2 [Caenorhabditis elegans]
|
KAF7633222.1 CULLIN_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511|GO:0031625
|
GO:0008150_0.946|GO:0005575_0.833|GO:0110165_0.824|GO:0005622_0.666|GO:0016020_0.613|GO:0043226_0.612|GO:0043229_0.587|GO:0043227_0.563|GO:0043231_0.543|GO:0008152_0.530|GO:0044238_0.501
|
IPR001373+179-393+|IPR016158+135-372_175-322+|IPR036317+148-390+|IPR036388+421-510+|IPR044554+15-505+
|
SM00182+175-322+
|
PF00888+179-393+Cullin_family
|
— |
PTHR45957+15-505+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
513-517
|
1.000
|
1-512
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
60671.990
|
5.521
|
-8.500
|
29.594
|
13.346
|
51.451
|
48.549
|
14.700
|
14.894
|
41.779
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
982.027
|
1458.733
|
1206.011
|
862.351
|
911.447
|
738.788
|
1093.418
|
1046.456
|
1183.327
|
664.920
|
887.094
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.505
|
-0.896
|
-0.375
|
— |
-0.288
|
0.576
|
0.396
|
— | — | — | — | — | — |
No JSON data available for plots.