Hg_chrom7_TN10mRNA_13920
Organism: Heterodera glycines Gene Locus: chr7:4740850-4743841 Feature type: polypeptideProtein Sequence
Length: 600
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.911 | 1.085 | 0.879 | 1.724 | 1.556 | 1.197 | 0.516 | 1.417 | 1.074 | 1.261 | 0.606 | 1.569 | 1.343 | 1.026 | 1.871 | 0.619 | 0.628 | 0.682 | 1.026 | 0.686 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13137
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRR,RRRKTAPALLRNKRTRI,RKQIQRTISAQWAPRLRER,KRYFENRLSEAVIHRCRRC
|
— | — | — | — | — | — |
0.000
|
— | — |
0.822
|
0.074
|
0.013
|
0.380
|
0.082
|
0.082
|
0.068
|
0.008
|
0.076
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002413
|
1.000
|
3.000
|
Hsc_gene_10683.t1;Hsc_gene_10683.t2;Hsc_gene_10683.t3
|
Hsc_gene_10683.t1;Hsc_gene_10683.t2
|
— | — |
KAI1722439.1 E3 ubiquitin-protein ligase [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.959|GO:0009987_0.914|GO:0065007_0.900|GO:0003674_0.895|GO:0005575_0.887|GO:0050789_0.887|GO:0110165_0.877|GO:0050794_0.861|GO:0032501_0.843|GO:0050896_0.833|GO:0008152_0.808|GO:0044238_0.805|GO:0005622_0.792|GO:0043170_0.788|GO:0048519_0.774|GO:0016020_0.761|GO:0048523_0.761|GO:0019538_0.758|GO:0003824_0.755|GO:0048583_0.731|GO:0043226_0.726|GO:0043412_0.723|GO:0036211_0.719|GO:0140096_0.711|GO:0005737_0.708|GO:0016740_0.708|GO:0009056_0.702|GO:0043229_0.700|GO:0009057_0.691|GO:0016567_0.688|GO:0032446_0.688|GO:0043687_0.688|GO:0070647_0.688|GO:0043227_0.687|GO:0006508_0.686|GO:0030163_0.682|GO:0000209_0.677|GO:0016746_0.677|GO:0051603_0.677|GO:0043632_0.676|GO:0006511_0.675|GO:0019941_0.675|GO:0016755_0.669|GO:0019787_0.669|GO:0004842_0.668|GO:0061630_0.666|GO:0061659_0.666|GO:0043231_0.664|GO:0044237_0.631|GO:0009058_0.620|GO:0019222_0.608|GO:0044249_0.605|GO:0009059_0.599|GO:0031323_0.595|GO:0060255_0.593|GO:0010467_0.590|GO:0051239_0.577|GO:0009889_0.573|GO:0010556_0.573|GO:0031326_0.573|GO:0006950_0.569|GO:0010468_0.567|GO:0009892_0.549|GO:0031324_0.543|GO:0009605_0.542|GO:0010605_0.542|GO:0044419_0.539|GO:0006952_0.535|GO:0009607_0.535|GO:0043207_0.535|GO:0051241_0.535|GO:0051707_0.535|GO:0009890_0.533|GO:0031327_0.533|GO:0010558_0.532|GO:0080134_0.530|GO:0098542_0.529|GO:0140546_0.525|GO:0010629_0.524|GO:0031347_0.524|GO:0032101_0.524|GO:0001816_0.523|GO:0001817_0.523|GO:0002831_0.520|GO:0010498_0.519|GO:0009615_0.518|GO:0001818_0.517|GO:0032479_0.514|GO:0032480_0.514|GO:0032606_0.514|GO:0032608_0.514|GO:0032648_0.514|GO:0043161_0.514|GO:0050688_0.514|GO:0050691_0.514|GO:0051607_0.514|GO:0070936_0.514
|
IPR044066+325-565+|IPR047545+434-490+|IPR047546+500-556+|IPR051628+307-568+
|
— | — | — |
PTHR22770+307-568+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-87
|
1.000
|
88-600
|
7m4o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
69418.410
|
6.714
|
2.500
|
30.167
|
11.333
|
47.667
|
52.333
|
16.000
|
14.167
|
44.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2404.137
|
4776.584
|
4013.358
|
2748.624
|
2125.538
|
1882.912
|
3372.321
|
3046.505
|
1578.166
|
1097.283
|
1303.376
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.481
|
-0.934
|
-0.437
|
-0.403
|
-0.161
|
0.852
|
0.587
|
0.291
|
— | — | — | — | — |
No JSON data available for plots.