Hg_chrom7_TN10mRNA_13921
Organism: Heterodera glycines Gene Locus: chr7:4744006-4746393 Feature type: polypeptideProtein Sequence
Length: 448
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 1.09 | 1.015 | 0.308 | 0.595 | 1.087 | 0.824 | 1.228 | 1.24 | 1.357 | 0.676 | 0.919 | 1.86 | 1.073 | 1.458 | 1.084 | 0.695 | 1.015 | 1.889 | 0.919 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13138
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— |
9-29
|
0.996
|
3-23
|
0.999
|
— |
0.623
|
0.000
|
0.000
|
— |
0.122
|
0.248
|
0.402
|
0.209
|
0.278
|
0.309
|
0.156
|
0.046
|
0.198
|
0.820
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011176
|
1.000
|
1.000
|
Hsc_gene_10682.t1
|
Hsc_gene_10680.t1;Hsc_gene_10681.t1;Hsc_gene_10682.t1
|
— |
Q8VEB4.1 Phospholipase A2 group XV [Mus musculus]
|
KAI1722437.1 lecithin:cholesterol acyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0008374
|
GO:0008150_0.732|GO:0003674_0.731|GO:0005575_0.704|GO:0110165_0.702|GO:0009987_0.655|GO:0003824_0.635|GO:0008152_0.577|GO:0016020_0.555|GO:0044238_0.550|GO:0044237_0.547|GO:0016740_0.544|GO:0016746_0.521|GO:0016747_0.515
|
IPR003386+89-322_331-422+|IPR029058+53-422_103-437+
|
— |
PF02450+89-322_331-422+Lecithin:cholesterol_acyltransferase
|
— |
PTHR11440+52-433+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
427-448
|
1.000
|
1-426
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
50975.390
|
9.769
|
16.500
|
23.214
|
14.732
|
43.973
|
56.027
|
14.062
|
9.152
|
48.661
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
greenyellow
|
1801.770
|
1279.890
|
2772.277
|
904.589
|
499.548
|
937.391
|
2038.637
|
4964.610
|
1859.929
|
1463.946
|
1633.653
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
-0.638
|
-1.507
|
-0.889
|
0.923
|
1.131
|
2.300
|
-1.141
|
— | — | — | — | — |