Hg_chrom7_TN10mRNA_13922
Organism: Heterodera glycines Gene Locus: chr7:4746615-4750006 Feature type: polypeptideProtein Sequence
Length: 524
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.71 | 0.577 | 1.006 | 0.79 | 0.732 | 0.881 | 0.364 | 1.145 | 1.145 | 1.805 | 0.636 | 1.01 | 1.855 | 1.321 | 1.597 | 0.791 | 0.782 | 1.272 | 2.055 | 0.954 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13139
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
mitochondria
|
— |
30-50
|
0.983
|
— | — |
1-26
|
0.919
|
1.000
|
4.000
|
4.000
|
0.046
|
0.054
|
0.012
|
0.149
|
0.250
|
0.168
|
0.252
|
0.020
|
0.833
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011177
|
1.000
|
1.000
|
Hsc_gene_10679.t1
|
Hsc_gene_10679.t1
|
— |
Q23022.1 Acetylcholine receptor subunit alpha-type unc-38 [Caenorhabditis elegans]
|
ADF56009.1 nicotinic acetylcholine receptor alpha subunit 38 [Teladorsagia circumcincta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0022848|GO:0034220|GO:0045211
|
GO:0005575_0.951|GO:0110165_0.951|GO:0071944_0.913|GO:0005886_0.897|GO:0016020_0.897|GO:0008150_0.846|GO:0009987_0.824|GO:0065007_0.763|GO:0006810_0.750|GO:0051179_0.750|GO:0051234_0.750|GO:0055085_0.739|GO:0006811_0.727|GO:0034220_0.724|GO:0050789_0.719|GO:0007154_0.710|GO:0023052_0.709|GO:0030054_0.702|GO:0045202_0.684|GO:0007267_0.680|GO:0003674_0.676|GO:0098916_0.672|GO:0099536_0.672|GO:0099537_0.672|GO:0007268_0.663|GO:0005215_0.645|GO:0022857_0.645|GO:0050896_0.645|GO:0005216_0.638|GO:0015075_0.638|GO:0015267_0.638|GO:0022803_0.638|GO:0038023_0.636|GO:0060089_0.636|GO:0006812_0.623|GO:0098655_0.623|GO:0098590_0.612|GO:0022836_0.604|GO:0050794_0.589|GO:0051716_0.577|GO:0003008_0.571|GO:0032501_0.571|GO:0008324_0.563|GO:0007165_0.555|GO:0015276_0.550|GO:0022834_0.550|GO:0065008_0.550|GO:0042391_0.540|GO:0005261_0.533|GO:0030594_0.507|GO:0050877_0.505|GO:0097060_0.503
|
IPR002394+69-85_103-117_121-133_139-157+|IPR006029+269-498+|IPR006201+13-499_38-403_82-98_115-126_159-173_256-268+|IPR006202+31-261+|IPR018000+159-173+|IPR036719+262-508+|IPR036734+20-267_29-262+|IPR038050+268-381_435-513+
|
— |
PF02931+31-261+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+269-498+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000001+268-381+Neuronal_nicotinic_acetylcholine_receptor_subunit_3|G3DSA:1.20.58.390:FF:000022+437-513+Nicotinic_acetylcholine_receptor_subunit_alpha4|G3DSA:2.70.170.10:FF:000013+22-267+Acetylcholine_receptor_subunit_alpha
|
PTHR18945+38-403+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-524
|
8st4_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
61009.460
|
8.924
|
17.000
|
24.237
|
14.885
|
40.458
|
59.542
|
14.313
|
9.924
|
45.038
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
778.437
|
948.685
|
3037.751
|
1072.227
|
434.762
|
340.146
|
385.711
|
1547.408
|
138.505
|
389.274
|
281.802
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.450
|
— |
-1.394
|
-1.333
|
-0.340
|
— |
2.084
|
-1.863
|
— | — | — | — | — |