Hg_chrom7_TN10mRNA_13923
Organism: Heterodera glycines Gene Locus: chr7:4750436-4754546 Feature type: polypeptideProtein Sequence
Length: 843
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.145 | 0.938 | 0.82 | 0.695 | 0.969 | 1.703 | 0.847 | 1.364 | 0.685 | 0.994 | 1.204 | 1.116 | 0.692 | 1.186 | 0.702 | 1.135 | 0.972 | 1.078 | 0.456 | 0.977 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13140
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKR,RRLFEVISSGQFLSKRSKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.801
|
0.107
|
0.003
|
0.445
|
0.111
|
0.041
|
0.091
|
0.003
|
0.079
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001399
|
3.000
|
2.000
|
Hsc_gene_10678.t2;Hsc_gene_10678.t3
|
Hsc_gene_10672.t1;Hsc_gene_10672.t2;Hsc_gene_10672.t3;Hsc_gene_10678.t1;Hsc_gene_10678.t2;Hsc_gene_10678.t3
|
— |
Q5REX3.1 Zinc finger RNA-binding protein [Pongo abelii]
|
KAF7634566.1 DZF domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0008270
|
GO:0003674_0.780|GO:0005488_0.755|GO:0005575_0.747|GO:0110165_0.743|GO:0005622_0.681|GO:0097159_0.663|GO:0008150_0.656|GO:0003676_0.643|GO:0009987_0.606|GO:0043226_0.563|GO:0043229_0.546|GO:0016020_0.521
|
IPR003604+188-222_233-267_377-411+|IPR006561+452-802_520-778+|IPR013087+191-215_192-215_236-260_238-260_380-404_382-404+|IPR036236+182-221_236-270_358-411+|IPR043519+476-658+|IPR049401+466-655+|IPR049402+664-776+
|
SM00355+191-215_236-260_380-404+|SM00451+188-222_233-267_377-411+|SM00572+520-778+
|
PF07528+466-655+DZF_N-terminal_domain|PF12874+192-215_236-260_380-404+Zinc-finger_of_C2H2_type|PF20965+664-776+DZF_C-terminal_domain
|
G3DSA:1.10.1410.40:FF:000001+653-776+interleukin_enhancer-binding_factor_3_isoform_X1
|
PTHR45762+38-803+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
400-468;777-843
|
2.000
|
1-399;469-776
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
91655.580
|
8.405
|
20.500
|
24.437
|
9.134
|
48.992
|
51.008
|
14.116
|
10.320
|
54.686
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4230.934
|
4435.779
|
3664.117
|
3891.228
|
3941.399
|
3507.558
|
3666.818
|
3929.378
|
5833.636
|
3996.503
|
4783.846
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.505
|
-0.326
|
0.196
|
— |
-0.153
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.