SCN Proteipedia

Hg_chrom7_TN10mRNA_13924

Organism: Heterodera glycines Gene Locus: chr7:4750436-4754553 Feature type: polypeptide

Protein Sequence

Length: 793

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.07	0.909	0.825	0.739	0.967	1.778	0.796	1.387	0.701	1.022	1.261	1.187	0.701	1.188	0.695	1.009	1.034	1.127	0.388	1.038	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13140	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.995

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RKKR,RRLFEVISSGQFLSKRSKL	—	—	—	—	—	—	0.000	—	—	0.800	0.105	0.003	0.514	0.094	0.040	0.088	0.002	0.073	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001399	3.000	2.000	Hsc_gene_10678.t2;Hsc_gene_10678.t3	Hsc_gene_10672.t1;Hsc_gene_10672.t2;Hsc_gene_10672.t3;Hsc_gene_10678.t1;Hsc_gene_10678.t2;Hsc_gene_10678.t3	—	Q5REX3.1 Zinc finger RNA-binding protein [Pongo abelii]	KAF7634566.1 DZF domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0008270	GO:0003674_0.783\|GO:0005488_0.750\|GO:0005575_0.747\|GO:0110165_0.743\|GO:0005622_0.680\|GO:0097159_0.655\|GO:0008150_0.654\|GO:0003676_0.635\|GO:0009987_0.609\|GO:0043226_0.567\|GO:0043229_0.551\|GO:0016020_0.532	IPR003604+177-211_222-256_366-400+\|IPR006561+441-793_509-767+\|IPR013087+180-204_181-204_225-249_227-249_369-393_371-393+\|IPR036236+171-210_225-259_347-400+\|IPR043519+465-647+\|IPR049401+455-644+\|IPR049402+653-765+	SM00355+180-204_225-249_369-393+\|SM00451+177-211_222-256_366-400+\|SM00572+509-767+	PF07528+455-644+DZF_N-terminal_domain\|PF12874+181-204_225-249_369-393+Zinc-finger_of_C2H2_type\|PF20965+653-765+DZF_C-terminal_domain	G3DSA:1.10.1410.40:FF:000001+642-765+interleukin_enhancer-binding_factor_3_isoform_X1	PTHR45762+24-781+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	389-457;768-793	2.000	1-388;458-767	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.818	86858.560	8.562	22.000	24.842	9.332	49.054	50.946	14.502	10.340	53.468

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	4230.934	4435.779	3664.117	3891.228	3941.399	3507.558	3666.818	3929.378	5833.636	3996.503	4783.846

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.505	-0.326	0.196	—	-0.153	—	—	—	—	—	—	—	—

No JSON data available for plots.

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