Hg_chrom7_TN10mRNA_13925
Organism: Heterodera glycines Gene Locus: chr7:4754823-4757001 Feature type: polypeptideProtein Sequence
Length: 251
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.927 | 0.463 | 0.942 | 0.412 | 1.527 | 0.919 | 0.854 | 1.793 | 1.594 | 1.184 | 1.207 | 1.875 | 0.996 | 0.306 | 0.894 | 1.138 | 0.98 | 1.026 | 0.919 | 0.469 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13141
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.813
|
0.260
|
0.014
|
0.614
|
0.141
|
0.113
|
0.231
|
0.021
|
0.045
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011178
|
1.000
|
1.000
|
Hsc_gene_10677.t1
|
Hsc_gene_10677.t1
|
— |
Q95008.1 Proteasome subunit alpha type-5 [Caenorhabditis elegans]
|
KAI3413820.1 Proteasome subunit alpha type-5 [Globodera pallida]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0006511|GO:0019773|GO:0051603
|
GO:0005575_0.891|GO:0110165_0.885|GO:0005622_0.850|GO:0005737_0.740|GO:0043226_0.693|GO:0043229_0.677|GO:0016020_0.633|GO:0032991_0.619|GO:0008150_0.602|GO:0043227_0.571|GO:0043231_0.553|GO:1902494_0.541|GO:0140535_0.527|GO:1905368_0.516|GO:1905369_0.516|GO:0000502_0.515
|
IPR000426+8-29_8-30+|IPR001353+31-222+|IPR023332+23-248+|IPR029055+5-250_7-248+|IPR050115+6-225+
|
SM00948+8-30+
|
PF00227+31-222+Proteasome_subunit|PF10584+8-29+Proteasome_subunit_A_N-terminal_signature
|
— |
PTHR11599+6-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-251
|
8qys_U
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
27924.970
|
6.413
|
-0.500
|
30.279
|
9.960
|
49.801
|
50.199
|
15.936
|
14.343
|
45.817
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3847.553
|
1981.334
|
2871.897
|
4151.418
|
4215.822
|
4058.894
|
2950.003
|
3868.319
|
5624.322
|
3578.171
|
4455.093
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.306
|
0.930
|
0.640
|
— | — |
-0.449
|
— |
-0.248
|
— | — | — | — | — |
No JSON data available for plots.