Hg_chrom7_TN10mRNA_13928
Organism: Heterodera glycines Gene Locus: chr7:4763720-4765603 Feature type: polypeptideProtein Sequence
Length: 345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.506 | 0.607 | 0.843 | 0.0 | 1.159 | 1.486 | 0.759 | 1.304 | 1.031 | 1.449 | 1.274 | 1.876 | 0.966 | 0.725 | 2.13 | 1.035 | 0.903 | 1.098 | 0.223 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13144
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.943
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKPKQFEKRVNQRLDRK,RRVMSPNTSKALRVLKRNK,RARRKKGKTARRARQGLLGFTRIAREGKKPKQFEKR
|
3-26
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.859
|
0.108
|
0.033
|
0.183
|
0.077
|
0.019
|
0.015
|
0.001
|
0.044
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004567
|
2.000
|
1.000
|
Hsc_gene_10674.t1
|
Hsc_gene_10674.t1
|
— |
Q91YU8.2 Suppressor of SWI4 1 homolog [Mus musculus]
|
KAH7727712.1 brix domain-containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006364|GO:0019843
|
GO:0005575_0.798|GO:0110165_0.795|GO:0005622_0.767|GO:0016020_0.746|GO:0043226_0.739|GO:0043229_0.729|GO:0043227_0.679|GO:0043231_0.665|GO:0008150_0.618|GO:0005634_0.546|GO:0003674_0.544|GO:0005488_0.511
|
IPR007109+71-335_74-329_84-328+|IPR045112+44-340+
|
SM00879+74-329+
|
PF04427+84-328+Brix_domain
|
— |
PTHR12661+44-340+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-79;342-345
|
1.000
|
80-341
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
39653.880
|
10.989
|
29.500
|
33.043
|
8.116
|
54.203
|
45.797
|
21.449
|
11.594
|
41.739
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
945.756
|
1020.234
|
907.210
|
1084.829
|
1268.970
|
1156.279
|
1603.465
|
1152.727
|
1084.910
|
251.357
|
608.594
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.400
|
— |
0.368
|
0.194
|
— |
0.483
|
— |
0.620
|
— | — | — | — | — |
No JSON data available for plots.