Hg_chrom7_TN10mRNA_13930
Organism: Heterodera glycines Gene Locus: chr7:4766888-4769594 Feature type: polypeptideProtein Sequence
Length: 433
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.537 | 1.289 | 1.302 | 0.876 | 0.808 | 1.421 | 0.852 | 1.039 | 1.386 | 1.061 | 1.33 | 1.087 | 1.026 | 1.199 | 0.707 | 0.726 | 1.212 | 1.12 | 0.355 | 0.611 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13146
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKRPTLCVIGYDNLKKCIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.439
|
0.265
|
0.055
|
0.538
|
0.199
|
0.113
|
0.201
|
0.021
|
0.144
|
0.224
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001399
|
3.000
|
2.000
|
Hsc_gene_10678.t2;Hsc_gene_10678.t3
|
— | — |
Q96KR1.2 Zinc finger RNA-binding protein [Homo sapiens]
|
KAF7634566.1 DZF domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0008270
|
GO:0003674_0.888|GO:0005488_0.832|GO:0097159_0.738|GO:0003676_0.718|GO:0003723_0.677
|
IPR003604+256-290+|IPR013087+259-283_261-283+|IPR036236+237-290+
|
SM00451+256-290+
|
PF12874+259-283+Zinc-finger_of_C2H2_type
|
— |
PTHR45762+235-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
278-433
|
1.000
|
1-277
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
47976.800
|
7.564
|
5.500
|
26.328
|
8.314
|
49.885
|
50.115
|
14.319
|
12.009
|
53.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
659.866
|
1496.149
|
531.948
|
405.999
|
324.928
|
278.450
|
234.669
|
444.404
|
729.450
|
946.123
|
853.263
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.721
|
-2.019
|
-0.281
|
-0.353
|
-0.208
|
— |
0.570
|
-0.778
|
— | — | — | — | — |
No JSON data available for plots.