Hg_chrom7_TN10mRNA_13931
Organism: Heterodera glycines Gene Locus: chr7:4769830-4771486 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.693 | 1.925 | 1.204 | 1.028 | 0.828 | 1.274 | 0.985 | 1.49 | 0.662 | 0.582 | 0.401 | 1.169 | 1.564 | 1.146 | 1.689 | 1.372 | 0.923 | 0.652 | 0.509 | 0.877 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13147
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.853
|
0.100
|
0.036
|
0.376
|
0.140
|
0.074
|
0.019
|
0.097
|
0.083
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011182
|
1.000
|
1.000
|
Hsc_gene_10673.t1
|
Hsc_gene_10672.t1;Hsc_gene_10672.t2;Hsc_gene_10672.t3;Hsc_gene_10673.t1;Hsc_gene_10673.t2
|
— |
Q5ZLS2.1 Enhancer of mRNA-decapping protein 3 [Gallus gallus]
|
KAF7634568.1 FDF domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.872|GO:0110165_0.865|GO:0003674_0.864|GO:0005488_0.829|GO:0005622_0.804|GO:0005515_0.762|GO:0016020_0.749|GO:0043226_0.747|GO:0043229_0.747|GO:0005737_0.702|GO:0042802_0.667|GO:0043228_0.620|GO:0043232_0.620|GO:0005829_0.602|GO:0099080_0.563|GO:0035770_0.553|GO:0036464_0.553
|
IPR025762+218-254+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
103-201;268-302
|
2.000
|
1-102;202-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
33729.940
|
6.935
|
2.500
|
25.497
|
12.252
|
53.974
|
46.026
|
13.907
|
11.589
|
57.616
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
586.105
|
809.222
|
576.620
|
480.938
|
445.039
|
423.033
|
587.160
|
575.317
|
192.110
|
958.630
|
630.121
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.718
|
-0.888
|
-0.154
|
-0.143
|
— |
0.484
|
0.338
|
— |
-2.426
|
— | — | — | — |
No JSON data available for plots.