Hg_chrom7_TN10mRNA_13933
Organism: Heterodera glycines Gene Locus: chr7:4780843-4781787 Feature type: polypeptideProtein Sequence
Length: 96
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.484 | 0.727 | 1.136 | 2.155 | 1.389 | 1.87 | 0.744 | 1.562 | 1.852 | 0.985 | 1.42 | 1.225 | 0.868 | 0.601 | 2.338 | 0.446 | 1.025 | 0.0 | 0.0 | 0.306 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13149
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.887
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
KRNNIDPRARFRGRKG,KKCIKESDCIQIKRKKARE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.224
|
0.565
|
0.075
|
0.455
|
0.422
|
0.137
|
0.141
|
0.041
|
0.101
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011181
|
2.000
|
0.000
|
0.000
|
— | — |
A1L3N6.1 Cytochrome c oxidase assembly factor 5 [Xenopus laevis]
|
KAI6183129.1 Cytochrome c oxidase assembly factor 5 [Aphelenchoides bicaudatus]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.924|GO:0110165_0.911|GO:0005622_0.855|GO:0043226_0.813|GO:0043229_0.795|GO:0016020_0.788|GO:0043227_0.729|GO:0005737_0.715|GO:0043231_0.711|GO:0005739_0.557
|
IPR018793+27-94_30-92+
|
— |
PF10203+30-92+Cytochrome_c_oxidase_assembly_protein_PET191
|
— |
PTHR28627+27-94+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25;94-96
|
1.000
|
26-93
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.562
|
11232.910
|
9.088
|
7.500
|
38.542
|
7.292
|
58.333
|
41.667
|
23.958
|
14.583
|
38.542
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
114.401
|
73.936
|
120.690
|
138.946
|
146.401
|
123.603
|
138.962
|
159.808
|
41.211
|
131.215
|
92.642
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.477
|
0.773
|
0.312
|
— | — | — | — | — | — | — | — | — | — |
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