Hg_chrom7_TN10mRNA_13934
Organism: Heterodera glycines Gene Locus: chr7:4782200-4786264 Feature type: polypeptideProtein Sequence
Length: 654
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.64 | 1.351 | 1.029 | 0.844 | 0.841 | 1.607 | 0.947 | 1.223 | 0.917 | 0.785 | 1.112 | 1.349 | 1.104 | 1.382 | 0.999 | 1.114 | 1.053 | 0.95 | 0.353 | 0.675 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13150
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RKKR,RKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.630
|
0.100
|
0.017
|
0.603
|
0.169
|
0.120
|
0.093
|
0.068
|
0.097
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002414
|
1.000
|
3.000
|
Hsc_gene_10672.t1;Hsc_gene_10672.t2;Hsc_gene_10672.t3
|
Hsc_gene_10672.t1;Hsc_gene_10672.t2;Hsc_gene_10672.t3;Hsc_gene_10673.t1;Hsc_gene_10673.t2;Hsc_gene_10678.t1;Hsc_gene_10678.t2;Hsc_gene_10678.t3
|
— |
Q96KR1.2 Zinc finger RNA-binding protein [Homo sapiens]
|
KAF7634566.1 DZF domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0008270
|
GO:0003674_0.890|GO:0005488_0.844|GO:0097159_0.749|GO:0003676_0.736|GO:0003723_0.684
|
IPR003604+262-296+|IPR013087+265-289_267-289+|IPR025762+570-606+|IPR036236+243-296+
|
SM00451+262-296+
|
PF12874+265-289+Zinc-finger_of_C2H2_type
|
— |
PTHR45762+240-364+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11;93-178;284-362;453-553;620-654
|
4.000
|
12-92;179-283;363-452;554-619
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
72119.220
|
8.557
|
18.000
|
25.382
|
9.174
|
51.682
|
48.318
|
14.679
|
10.703
|
55.046
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1123.252
|
1614.074
|
909.856
|
861.203
|
781.217
|
663.650
|
776.765
|
897.730
|
479.344
|
2115.535
|
1414.310
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.056
|
-1.043
|
— |
-0.172
|
-0.220
|
0.237
|
0.332
|
— |
-2.258
|
— | — | — | — |
No JSON data available for plots.