Hg_chrom7_TN10mRNA_13935
Organism: Heterodera glycines Gene Locus: chr7:4786452-4787082 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.543 | 1.86 | 1.697 | 0.0 | 1.111 | 0.171 | 0.635 | 2.667 | 0.444 | 0.09 | 1.212 | 2.353 | 0.556 | 0.641 | 4.218 | 1.524 | 0.437 | 0.505 | 0.0 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13151
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.874
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
NRERSHRSTRKRSRDRSNERRHKAPRSSHKERHRDRDRRGDRDRDRDRERERHSSGGDKNREHRSKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.937
|
0.044
|
0.005
|
0.131
|
0.031
|
0.066
|
0.050
|
0.003
|
0.017
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011183
|
1.000
|
1.000
|
Hsc_gene_10671.t1
|
Hsc_gene_10671.t1
|
— |
Q6DDA4.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Xenopus tropicalis]
|
KAF7634567.1 SNRNP27 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008380
|
GO:0005575_0.900|GO:0110165_0.898|GO:0005622_0.884|GO:0043226_0.876|GO:0043229_0.868|GO:0005634_0.848|GO:0016020_0.848|GO:0043227_0.848|GO:0043231_0.848|GO:0008150_0.535|GO:0032991_0.518|GO:1990904_0.518
|
IPR013957+96-148+
|
— |
PF08648+96-148+U4/U6.U5_small_nuclear_ribonucleoproteins
|
— |
PTHR31077+11-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-150
|
0.000
|
— |
8r0a_X
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
17961.730
|
11.628
|
23.000
|
50.000
|
10.000
|
72.000
|
28.000
|
34.000
|
16.000
|
47.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
steelblue
|
596.426
|
426.298
|
369.368
|
616.268
|
747.393
|
618.942
|
582.924
|
409.082
|
398.533
|
896.610
|
683.148
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.437
|
0.395
|
0.847
|
0.246
|
-0.258
|
— |
-0.699
|
0.653
|
— | — | — | — | — |
No JSON data available for plots.