Hg_chrom7_TN10mRNA_13938
Organism: Heterodera glycines Gene Locus: chr7:4793962-4799198 Feature type: polypeptideProtein Sequence
Length: 1,253
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.012 | 0.52 | 0.987 | 0.22 | 2.155 | 1.862 | 0.789 | 1.077 | 0.887 | 0.96 | 0.701 | 1.502 | 0.776 | 1.028 | 1.336 | 1.209 | 0.994 | 0.689 | 0.675 | 0.329 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13154
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.852
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.218
|
0.235
|
0.084
|
0.512
|
0.449
|
0.269
|
0.206
|
0.076
|
0.586
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002416
|
1.000
|
3.000
|
Hsc_gene_10666.t1;Hsc_gene_10666.t2;Hsc_gene_10666.t3
|
Hsc_gene_10666.t1;Hsc_gene_10666.t2
|
— |
H2KYS8.1 Copine family protein 1 [Caenorhabditis elegans]
|
KAF7632552.1 VWFA domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.530
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.905|GO:0110165_0.904|GO:0008150_0.816|GO:0016020_0.800|GO:0009987_0.761|GO:0043226_0.663|GO:0005622_0.635|GO:0065007_0.612|GO:0043227_0.589|GO:0050789_0.578|GO:0071944_0.574|GO:0005886_0.557|GO:0050896_0.555|GO:0043229_0.541|GO:0003674_0.524|GO:0050794_0.504
|
IPR002035+979-1169+|IPR010734+1004-1207+|IPR036465+980-1149_1006-1170+|IPR052079+3-1220+
|
SM00327+979-1169+
|
PF07002+1004-1207+Copine
|
— |
PTHR45751+3-1220+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
61-934;1208-1253
|
2.000
|
1-60;935-1207
|
8hmh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
139350.800
|
4.467
|
-76.500
|
31.684
|
6.943
|
55.706
|
44.294
|
13.328
|
18.356
|
48.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1475.234
|
6320.100
|
2353.147
|
749.794
|
721.506
|
1180.414
|
1124.347
|
2392.196
|
254.369
|
697.807
|
507.762
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.656
|
-3.213
|
-1.540
|
— |
0.725
|
— |
0.915
|
-0.946
|
— | — | — | — | — |
No JSON data available for plots.