Hg_chrom7_TN10mRNA_13939
Organism: Heterodera glycines Gene Locus: chr7:4799550-4802635 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 0.828 | 0.412 | 0.781 | 0.701 | 0.913 | 1.079 | 1.294 | 1.366 | 1.531 | 0.441 | 1.904 | 1.798 | 0.934 | 1.387 | 1.156 | 0.849 | 0.834 | 1.743 | 0.952 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13155
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.619
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.178
|
0.883
|
0.037
|
0.120
|
0.123
|
0.207
|
0.227
|
0.052
|
0.085
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011184
|
1.000
|
1.000
|
Hsc_gene_10665.t1
|
Hsc_gene_10665.t1;Hsc_gene_10665.t2;Hsc_gene_10665.t3
|
— |
Q9BQT8.1 Mitochondrial 2-oxodicarboxylate carrier [Homo sapiens]
|
KAI1718589.1 mitochondrial carrier protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0055085
|
GO:0008150_0.768|GO:0005575_0.745|GO:0110165_0.729|GO:0009987_0.705|GO:0016020_0.689|GO:0005622_0.641|GO:0003674_0.610|GO:0043226_0.610|GO:0043227_0.595|GO:0043229_0.595|GO:0005737_0.591|GO:0043231_0.579|GO:0051179_0.560|GO:0006810_0.555|GO:0051234_0.555
|
IPR002067+19-32_32-46_71-91_118-136_166-184_221-243+|IPR018108+14-96_17-98_103-193_104-194_212-300_213-304+|IPR023395+15-295_16-307+|IPR051752+15-301+
|
— |
PF00153+17-98_104-194_213-304+Mitochondrial_carrier_protein
|
— |
PTHR46356+15-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-309
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
34676.310
|
9.532
|
14.000
|
18.770
|
14.563
|
39.159
|
60.841
|
12.298
|
6.472
|
47.249
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
589.234
|
999.818
|
389.870
|
381.923
|
392.969
|
505.796
|
371.732
|
800.090
|
95.470
|
1065.473
|
649.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.589
|
-1.526
|
— | — |
0.378
|
-0.434
|
0.557
|
-0.963
|
-3.581
|
— | — | — | — |
No JSON data available for plots.