Hg_chrom7_TN10mRNA_13944
Organism: Heterodera glycines Gene Locus: chr7:4818404-4818946 Feature type: polypeptideProtein Sequence
Length: 127
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.458 | 1.099 | 1.145 | 0.0 | 2.1 | 1.211 | 0.375 | 0.787 | 0.7 | 1.064 | 2.744 | 1.39 | 1.094 | 0.606 | 1.446 | 0.675 | 1.42 | 0.477 | 0.606 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13160
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.542
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.867
|
0.080
|
0.023
|
0.364
|
0.030
|
0.018
|
0.096
|
0.004
|
0.051
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011187
|
1.000
|
1.000
|
Hsc_gene_10658.t1
|
— | — | — |
KAI1705503.1 protein FAM32A [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.957|GO:0110165_0.952|GO:0005622_0.938|GO:0043226_0.917|GO:0043229_0.911|GO:0016020_0.894|GO:0043227_0.854|GO:0043231_0.838|GO:0003674_0.829|GO:0005488_0.829|GO:0043228_0.808|GO:0043232_0.808|GO:0005634_0.749|GO:0003676_0.716|GO:0097159_0.716|GO:0003723_0.690|GO:0031974_0.657|GO:0031981_0.656|GO:0043233_0.656|GO:0070013_0.656|GO:0005730_0.625|GO:0005654_0.593
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-127
|
0.000
|
— |
9fmd_32
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
14989.080
|
10.434
|
9.000
|
45.669
|
6.299
|
68.504
|
31.496
|
26.772
|
18.898
|
37.795
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
1503.671
|
926.453
|
1315.750
|
898.798
|
1031.019
|
1189.893
|
1158.524
|
1494.336
|
2761.039
|
1502.240
|
2041.725
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.276
|
-0.181
|
-0.440
|
0.166
|
0.221
|
— |
0.223
|
— | — |
-1.477
|
— | — | — |
No JSON data available for plots.