Hg_chrom7_TN10mRNA_13945
Organism: Heterodera glycines Gene Locus: chr7:4819077-4820344 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.041 | 1.62 | 0.271 | 0.515 | 0.912 | 0.765 | 0.355 | 1.493 | 1.106 | 0.941 | 0.98 | 1.463 | 1.382 | 1.435 | 1.32 | 1.279 | 1.223 | 0.829 | 1.148 | 1.024 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13161
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
9-29
|
0.985
|
26-66
|
0.937
|
— | — |
0.000
|
— | — |
0.075
|
0.970
|
0.012
|
0.086
|
0.013
|
0.030
|
0.037
|
0.028
|
0.072
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011188
|
1.000
|
1.000
|
Hsc_gene_10657.t1
|
Hsc_gene_10657.t1
|
— | — |
KAI1711512.1 mitochondrial ribosomal protein l51 / s25 / CI-B8 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0032543
|
GO:0005575_0.890|GO:0110165_0.888|GO:0005622_0.840|GO:0016020_0.808|GO:0043226_0.802|GO:0043229_0.793|GO:0043227_0.765|GO:0005737_0.764|GO:0043231_0.752|GO:0005739_0.570|GO:0008150_0.519
|
IPR007741+55-128_63-108+|IPR036249+45-129+|IPR039927+33-165+
|
SM00916+55-128+
|
PF05047+63-108+Mitochondrial_ribosomal_protein_L51_/_S25_/_CI-B8_domain
|
— |
PTHR21396+33-165+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
186-201
|
1.000
|
1-185
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
22776.100
|
10.357
|
15.000
|
22.886
|
12.935
|
49.254
|
50.746
|
15.920
|
6.965
|
51.244
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
1014.073
|
675.581
|
767.719
|
871.134
|
1083.600
|
822.086
|
814.188
|
730.722
|
1704.517
|
996.294
|
1299.818
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.230
|
0.291
|
0.283
|
-0.384
|
— |
-0.274
|
0.299
|
— | — | — | — | — |
No JSON data available for plots.