Hg_chrom7_TN10mRNA_13946
Organism: Heterodera glycines Gene Locus: chr7:4820563-4824172 Feature type: polypeptideProtein Sequence
Length: 801
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 1.481 | 0.817 | 0.99 | 1.124 | 1.312 | 0.684 | 1.561 | 1.137 | 1.113 | 1.135 | 1.469 | 1.075 | 1.176 | 0.943 | 0.981 | 0.819 | 0.87 | 1.056 | 0.588 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13162
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRR,RKLKAGEKKRKT,KRCELVKKKRKKEKI,KRKTTGDSKGAEHQQKKSK,RKTTGDSKGAEHQQKKSKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.887
|
0.105
|
0.005
|
0.278
|
0.059
|
0.035
|
0.081
|
0.004
|
0.107
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004569
|
1.000
|
2.000
|
Hsc_gene_10655.t1;Hsc_gene_10655.t2
|
Hsc_gene_10655.t1;Hsc_gene_10655.t2;Hsc_gene_10656.t1
|
— |
O02219.1 Aryl hydrocarbon receptor nuclear translocator homolog [Caenorhabditis elegans]
|
KAI3413761.1 PAS fold [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0005634|GO:0005667|GO:0005737|GO:0006355|GO:0046983
|
GO:0008150_0.949|GO:0009987_0.836|GO:0003674_0.804|GO:0065007_0.801|GO:0005575_0.785|GO:0110165_0.778|GO:0050789_0.765|GO:0005488_0.763|GO:0050794_0.750|GO:0005622_0.731|GO:0008152_0.707|GO:0016020_0.694|GO:0043226_0.688|GO:0043229_0.680|GO:0050896_0.667|GO:0043170_0.661|GO:0048518_0.660|GO:0044237_0.653|GO:0044238_0.652|GO:0009058_0.650|GO:0048522_0.646|GO:0009059_0.641|GO:0044249_0.641|GO:0019222_0.627|GO:0031323_0.627|GO:0043227_0.625|GO:0060255_0.620|GO:0010467_0.616|GO:0006139_0.613|GO:0080090_0.603|GO:0043231_0.602|GO:0034654_0.601|GO:0009889_0.600|GO:0031326_0.600|GO:0090304_0.599|GO:0141187_0.596|GO:0010556_0.595|GO:0010468_0.594|GO:0016070_0.581|GO:0032774_0.578|GO:0009893_0.576|GO:0097159_0.573|GO:0031325_0.571|GO:0010604_0.568|GO:0019219_0.565|GO:0009891_0.560|GO:0031328_0.559|GO:0051252_0.559|GO:0003676_0.556|GO:0006351_0.556|GO:0032501_0.554|GO:2001141_0.552|GO:0010557_0.551|GO:0006355_0.550|GO:0045935_0.541|GO:0051254_0.537|GO:0005634_0.533|GO:1902680_0.530|GO:0032502_0.529|GO:0045893_0.529|GO:0048856_0.518|GO:0003677_0.516
|
IPR000014+365-427_367-435_376-427_546-612_560-614_560-658+|IPR001067+304-319_358-381_383-402_416-434_460-473_495-514_526-542_557-574+|IPR011598+289-342_291-340_295-348+|IPR013767+370-471+|IPR027799+116-160+|IPR035965+378-442_559-659+|IPR036638+282-345_291-359+|IPR050933+197-714+
|
SM00091+367-435_546-612+|SM00353+295-348+
|
PF00010+291-340+Helix-loop-helix_DNA-binding_domain|PF00989+370-471+PAS_fold|PF04641+1-249+Rtf2_RING-finger
|
G3DSA:4.10.280.10:FF:000011+281-345+Aryl_hydrocarbon_receptor_nuclear_translocator_2
|
PTHR23042+197-714+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
192-236;658-735;785-801
|
3.000
|
1-191;237-657;736-784
|
8xsb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
89973.630
|
8.099
|
19.500
|
26.467
|
10.362
|
49.813
|
50.187
|
15.231
|
11.236
|
49.813
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3005.522
|
3150.142
|
2442.726
|
2046.481
|
2017.873
|
2311.351
|
3081.398
|
3219.582
|
3667.470
|
3547.473
|
3598.900
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.597
|
-0.759
|
-0.146
|
— |
0.211
|
0.426
|
0.374
|
— | — | — | — | — | — |
No JSON data available for plots.