Hg_chrom7_TN10mRNA_13947
Organism: Heterodera glycines Gene Locus: chr7:4824147-4825575 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.0 | 0.741 | 0.521 | 1.977 | 0.69 | 0.817 | 1.024 | 1.433 | 1.203 | 2.023 | 0.724 | 0.937 | 1.15 | 0.551 | 0.975 | 0.591 | 0.888 | 1.206 | 1.225 | 0.937 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13163
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.074
|
0.049
|
0.009
|
0.187
|
0.257
|
0.568
|
0.527
|
0.004
|
0.731
|
0.236
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011189
|
1.000
|
1.000
|
Hsc_gene_10654.t1
|
Hsc_gene_10654.t1
|
— |
P41731.2 CD63 antigen [Mus musculus]
|
KAI1710208.1 tetraspanin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.828|GO:0005575_0.805|GO:0110165_0.805|GO:0009987_0.752|GO:0016020_0.695|GO:0071944_0.622|GO:0065007_0.596|GO:0005886_0.586|GO:0050789_0.509
|
IPR008952+190-273_190-274+|IPR018499+91-292_92-303+
|
— |
PF00335+92-303+Tetraspanin_family
|
— |
PTHR19282+91-292+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-314
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.741
|
34547.840
|
8.310
|
12.500
|
19.427
|
11.783
|
35.350
|
64.650
|
12.420
|
7.006
|
49.363
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
lightgreen
|
398.390
|
377.601
|
1029.602
|
562.853
|
173.374
|
181.729
|
129.249
|
553.269
|
92.422
|
545.761
|
351.473
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.219
|
0.439
|
-0.763
|
-1.729
|
— |
-0.481
|
1.503
|
-1.956
|
— | — | — | — | — |
No JSON data available for plots.