SCN Proteipedia

Hg_chrom7_TN10mRNA_13949

Organism: Heterodera glycines Gene Locus: chr7:4826726-4829482 Feature type: polypeptide

Protein Sequence

Length: 612

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.798	0.76	0.594	1.578	0.844	0.754	0.759	1.716	1.271	1.281	0.594	1.538	1.997	0.943	1.1	1.074	0.884	1.089	1.508	0.865	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13165	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.960

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	HRRGRPIR	—	—	—	—	—	—	0.174	—	—	0.073	0.040	0.006	0.082	0.243	0.534	0.354	0.005	0.844	0.008

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011191	1.000	1.000	Hsc_gene_10652.t1	Hsc_gene_10652.t1	—	A0A0K3AWM6.1 Protein mom-5 [Caenorhabditis elegans]	KAI1710207.1 frizzled/Smoothened family membrane region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005515\|GO:0007166\|GO:0016020	GO:0008150_0.966\|GO:0009987_0.925\|GO:0065007_0.810\|GO:0050789_0.784\|GO:0050794_0.751\|GO:0003674_0.749\|GO:0005575_0.744\|GO:0110165_0.744\|GO:0050896_0.716\|GO:0051716_0.692\|GO:0032501_0.690\|GO:0007154_0.686\|GO:0023052_0.681\|GO:0007165_0.658\|GO:0071944_0.654\|GO:0016020_0.653\|GO:0005886_0.651\|GO:0032502_0.635\|GO:0048856_0.635\|GO:0007166_0.623\|GO:0005488_0.611\|GO:0007275_0.583\|GO:0016055_0.572\|GO:0005515_0.565	IPR000539+251-596_258-592_264-286_292-314_345-369_389-412_484-505_558-578+\|IPR015526+59-593+\|IPR017981+261-499+\|IPR020067+66-184_70-186_71-176+\|IPR036790+69-196_70-182+	SM00063+70-186+\|SM01330+251-596+	PF01392+71-176+Fz_domain\|PF01534+258-592+Frizzled/Smoothened_family_membrane_region	—	PTHR11309+59-593+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	606-612	1.000	1-605	5urv_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.749	69007.150	7.925	16.500	21.078	15.523	40.196	59.804	12.745	8.333	49.346

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1206.984	2707.738	1628.842	1281.268	1120.277	994.902	2000.765	1990.524	334.223	633.270	505.107

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.962	-1.217	-0.238	-0.225	-0.157	1.018	0.900	—	—	—	1.554	—	—

No JSON data available for plots.

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