Hg_chrom7_TN10mRNA_13952
Organism: Heterodera glycines Gene Locus: chr7:4833879-4835186 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.0 | 1.111 | 0.811 | 0.549 | 1.486 | 1.633 | 0.569 | 1.115 | 0.495 | 1.463 | 0.869 | 1.686 | 1.238 | 1.164 | 0.975 | 1.001 | 0.679 | 1.158 | 0.98 | 0.375 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13168
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.210
|
0.366
|
0.089
|
0.760
|
0.177
|
0.324
|
0.545
|
0.043
|
0.251
|
0.371
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011193
|
1.000
|
1.000
|
Hsc_gene_10649.t1
|
Hsc_gene_10649.t1
|
— |
B0BNN3.1 Carbonic anhydrase 1 [Rattus norvegicus]
|
KAI1710789.1 eukaryotic-type carbonic anhydrase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004089|GO:0008270
|
GO:0005575_0.757|GO:0110165_0.751|GO:0003674_0.742|GO:0008150_0.664|GO:0005622_0.639|GO:0003824_0.586|GO:0005737_0.578
|
IPR001148+45-301_47-301_63-301+|IPR018338+144-160+|IPR023561+63-295+|IPR036398+48-309_52-301+
|
SM01057+47-301+
|
PF00194+63-301+Eukaryotic-type_carbonic_anhydrase
|
— |
PTHR18952+63-295+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
312-314
|
1.000
|
1-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.506
|
35151.980
|
5.265
|
-5.500
|
26.115
|
9.236
|
48.408
|
51.592
|
12.739
|
13.376
|
49.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
639.887
|
1148.336
|
1827.883
|
535.622
|
163.732
|
146.048
|
84.500
|
581.847
|
1236.219
|
189.354
|
638.011
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.442
|
-1.238
|
-1.662
|
-1.740
|
— |
-0.778
|
1.893
|
-2.641
|
— | — | — | — | — |
No JSON data available for plots.