Hg_chrom7_TN10mRNA_13955
Organism: Heterodera glycines Gene Locus: chr7:4840108-4841609 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.575 | 0.879 | 1.427 | 0.702 | 1.066 | 1.416 | 0.658 | 0.727 | 1.227 | 1.414 | 1.013 | 1.539 | 1.776 | 0.783 | 0.831 | 1.08 | 1.001 | 1.145 | 0.224 | 0.342 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13171
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.956
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
42-66
|
0.868
|
— | — | — | — |
0.000
|
— | — |
0.507
|
0.385
|
0.172
|
0.520
|
0.245
|
0.181
|
0.185
|
0.031
|
0.098
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011196
|
1.000
|
1.000
|
Hsc_gene_10646.t1
|
Hsc_gene_10646.t1
|
— |
A8Q3T2.1 ATPase ASNA1 homolog [Brugia malayi]
|
KAI1700655.1 anion-transporting ATPase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.780|GO:0110165_0.776|GO:0008150_0.738|GO:0005622_0.684|GO:0009987_0.681|GO:0005737_0.637|GO:0016020_0.629|GO:0043226_0.558|GO:0043229_0.536|GO:0043227_0.508|GO:0003674_0.507
|
IPR016300+9-335_26-330+|IPR025723+23-331+|IPR027417+2-343_19-326+|IPR027542+9-338+
|
— |
PF02374+23-331+Anion-transporting_ATPase
|
G3DSA:3.40.50.300:FF:000235+3-338+ATPase_ASNA1
|
PTHR10803+9-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-344
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
38524.040
|
4.774
|
-9.500
|
26.453
|
9.302
|
49.419
|
50.581
|
12.209
|
14.244
|
49.419
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1122.382
|
1441.925
|
964.258
|
1424.283
|
1506.571
|
1357.228
|
1403.117
|
982.382
|
805.134
|
901.661
|
860.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.810
|
-0.155
|
0.672
|
— | — | — |
-0.570
|
0.656
|
— | — | — | — | — |
No JSON data available for plots.