Hg_chrom7_TN10mRNA_13957
Organism: Heterodera glycines Gene Locus: chr7:4845849-4847896 Feature type: polypeptideProtein Sequence
Length: 519
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.717 | 1.075 | 0.841 | 0.93 | 1.06 | 0.543 | 0.872 | 1.445 | 1.627 | 1.042 | 0.555 | 0.453 | 1.017 | 1.149 | 1.376 | 1.156 | 0.821 | 1.372 | 1.334 | 1.02 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13173
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — |
41-88
|
0.970
|
33-63
|
0.968
|
— | — |
0.000
|
— | — |
0.251
|
0.310
|
0.054
|
0.301
|
0.280
|
0.461
|
0.389
|
0.007
|
0.572
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011198
|
1.000
|
1.000
|
Hsc_gene_10644.t1
|
Hsc_gene_10644.t1
|
— |
Q9TZI1.1 Ceramide kinase 1 [Caenorhabditis elegans]
|
KAF7633800.1 DAGKc domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016301
|
GO:0008150_0.857|GO:0003674_0.835|GO:0009987_0.779|GO:0005575_0.749|GO:0003824_0.745|GO:0110165_0.734|GO:0016740_0.648|GO:0008152_0.642|GO:0016020_0.636|GO:0044238_0.615|GO:0016772_0.608|GO:0044237_0.608|GO:0016301_0.604|GO:0001727_0.598|GO:0005622_0.583|GO:0005737_0.556|GO:0006629_0.530|GO:0044255_0.525|GO:0043226_0.516|GO:0065007_0.502
|
IPR001206+115-267_119-263_119-268+|IPR016064+116-502+|IPR017438+106-261+|IPR045363+371-518+|IPR050187+69-485+
|
SM00046+119-268+
|
PF00781+119-263+Diacylglycerol_kinase_catalytic_domain|PF19280+371-518+Ceramide_kinase_C-terminal_domain
|
— |
PTHR12358+69-485+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-519
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
57750.820
|
6.997
|
4.500
|
24.277
|
11.753
|
44.123
|
55.877
|
13.295
|
10.983
|
53.565
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1345.729
|
3213.859
|
1028.591
|
1226.484
|
1344.231
|
1668.812
|
2243.193
|
1414.505
|
648.413
|
848.875
|
762.963
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.873
|
-1.527
|
0.362
|
0.100
|
0.327
|
0.438
|
-0.343
|
0.808
|
— | — | — | — | — |
No JSON data available for plots.