Hg_chrom7_TN10mRNA_13962
Organism: Heterodera glycines Gene Locus: chr7:4866676-4867582 Feature type: polypeptideProtein Sequence
Length: 192
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.332 | 1.332 | 0.568 | 1.257 | 0.347 | 0.401 | 0.806 | 0.781 | 1.042 | 1.478 | 1.184 | 0.919 | 1.591 | 0.601 | 0.319 | 1.042 | 1.366 | 1.105 | 1.202 | 1.225 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13177
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
28-52
|
0.906
|
18-55
|
0.999
|
— | — |
0.003
|
— | — |
0.185
|
0.828
|
0.570
|
0.191
|
0.187
|
0.096
|
0.044
|
0.068
|
0.217
|
0.131
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000191
|
7.000
|
4.000
|
Hsc_gene_10633.t1;Hsc_gene_10640.t1;Hsc_gene_10723.t2;Hsc_gene_10724.t2
|
Hsc_gene_10633.t1;Hsc_gene_10633.t2;Hsc_gene_10640.t1
|
— | — |
EJW79875.1 TspO/MBR family protein [Wuchereria bancrofti]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.925|GO:0005575_0.898|GO:0110165_0.892|GO:0009987_0.862|GO:0003674_0.843|GO:0016020_0.809|GO:0006810_0.758|GO:0051179_0.758|GO:0051234_0.758|GO:0043226_0.722|GO:0043227_0.692|GO:0005215_0.680|GO:0031090_0.597|GO:0071944_0.531|GO:0005886_0.507
|
IPR004307+4-162_18-161+|IPR038330+8-163+
|
— |
PF03073+18-161+TspO/MBR_family
|
— |
PTHR10057+4-162+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-192
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
20773.200
|
9.185
|
9.500
|
16.146
|
13.021
|
39.062
|
60.938
|
10.938
|
5.208
|
56.771
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
319.808
|
47.003
|
86.049
|
151.766
|
470.020
|
413.632
|
688.163
|
284.830
|
3.710
|
593.329
|
340.635
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
1.554
|
0.927
|
1.599
|
— |
0.744
|
-0.644
|
1.415
|
-7.639
|
5.773
|
— | — | — |
No JSON data available for plots.