Hg_chrom7_TN10mRNA_13963
Organism: Heterodera glycines Gene Locus: chr7:4873491-4874060 Feature type: polypeptideProtein Sequence
Length: 74
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.571 | 0.943 | 0.737 | 0.0 | 1.802 | 3.465 | 0.483 | 0.0 | 0.0 | 0.913 | 2.662 | 2.385 | 0.0 | 0.52 | 1.931 | 0.193 | 0.665 | 0.614 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13178
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.883
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKQEQGTSTEKRMER
|
— | — | — | — | — | — |
0.000
|
— | — |
0.554
|
0.110
|
0.022
|
0.622
|
0.186
|
0.055
|
0.152
|
0.003
|
0.256
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011203
|
1.000
|
1.000
|
Hsc_gene_10639.t1
|
Hsc_gene_10639.t1
|
— |
Q9BKU8.1 Modifier of protein aggregation 4 [Caenorhabditis elegans]
|
KJH53312.1 4F5 family protein [Dictyocaulus viviparus]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.849|GO:0110165_0.844|GO:0005622_0.777|GO:0005737_0.669|GO:0043226_0.634|GO:0043229_0.634|GO:0016020_0.631|GO:0008150_0.551|GO:0043227_0.545|GO:0043231_0.536|GO:0065007_0.509
|
IPR007513+1-35+|IPR040211+1-59+
|
— |
PF04419+1-35+Small_EDRK-rich_factor_1/2-like,_N-terminal
|
— |
PTHR13596+1-59+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-74
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
8502.740
|
10.976
|
9.000
|
41.892
|
0.000
|
64.865
|
35.135
|
27.027
|
14.865
|
37.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
darkred
|
4333.836
|
1444.653
|
2538.996
|
2282.889
|
4575.053
|
11949.498
|
5892.721
|
4047.073
|
1452.391
|
5597.160
|
3820.831
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
0.523
|
— |
0.970
|
1.401
|
-1.011
|
-1.666
|
0.684
|
-2.052
|
— | — | — | — |
No JSON data available for plots.