SCN Proteipedia

Hg_chrom7_TN10mRNA_13964

Organism: Heterodera glycines Gene Locus: chr7:4874118-4876114 Feature type: polypeptide

Protein Sequence

Length: 208

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.839	1.006	1.486	0.497	1.122	1.479	0.859	0.721	0.962	0.585	1.457	2.262	0.668	0.925	0.392	1.168	1.103	0.947	1.109	1.131	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13179	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	21-Not_Clustered	0.885

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.650	0.270	0.013	0.556	0.159	0.113	0.408	0.040	0.048	0.063

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003765	2.000	1.000	Hsc_gene_10638.t1	Hsc_gene_10638.t1	—	Q6NYG6.1 Tudor domain-containing protein 3 [Danio rerio]	KAI1722428.1 survival motor neuron protein (SMN) domain-containing protein [Ditylenchus destructor]	No	-0.240

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0005634\|GO:0005737\|GO:0006397	GO:0008150_0.921\|GO:0005575_0.886\|GO:0009987_0.854\|GO:0110165_0.818\|GO:0005622_0.763\|GO:0016020_0.715\|GO:0043226_0.713\|GO:0008152_0.703\|GO:0043229_0.686\|GO:0003674_0.682\|GO:0044237_0.679\|GO:0044238_0.677\|GO:0009058_0.666\|GO:0043227_0.663\|GO:0043170_0.654\|GO:0043231_0.652\|GO:0044249_0.644\|GO:0009059_0.635\|GO:0006139_0.634\|GO:0010467_0.634\|GO:0005488_0.630\|GO:0034654_0.620\|GO:0090304_0.616\|GO:0141187_0.612\|GO:0016070_0.610\|GO:0032774_0.606\|GO:0065007_0.599\|GO:0050789_0.585\|GO:0005634_0.576\|GO:0005737_0.566\|GO:0031974_0.526\|GO:0043233_0.526\|GO:0070013_0.525\|GO:0031981_0.512\|GO:0006396_0.508\|GO:0008380_0.501	IPR002999+62-121_63-123+\|IPR010304+62-104+\|IPR040424+168-201+\|IPR047313+175-196+	SM00333+62-121+	PF06003+62-104+Survival_motor_neuron_protein_(SMN),_Tudor_domain\|PF20635+150-198+Survival_Motor_Neuron,_YG-box	—	PTHR39267+168-201+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	200-208	1.000	1-199	1g5v_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.545	23019.710	4.827	-5.500	27.885	9.135	52.885	47.115	12.981	14.904	54.327

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	yellow	1962.764	1260.047	1583.155	1883.890	2035.845	1628.418	1793.057	1825.233	2096.260	2511.282	2333.416

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.100	0.443	0.360	—	-0.307	—	—	—	—	—	—	—	—

No JSON data available for plots.

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