Hg_chrom7_TN10mRNA_13968
Organism: Heterodera glycines Gene Locus: chr7:4884874-4886948 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.602 | 0.943 | 1.269 | 0.699 | 1.426 | 1.386 | 0.429 | 1.239 | 1.552 | 1.674 | 1.092 | 1.59 | 1.189 | 0.433 | 1.241 | 0.837 | 0.517 | 0.751 | 1.04 | 1.325 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13182
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.526
|
0.166
|
0.017
|
0.580
|
0.168
|
0.251
|
0.255
|
0.005
|
0.058
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011206
|
1.000
|
1.000
|
Hsc_gene_10636.t1
|
Hsc_gene_10636.t1
|
— |
A8NY27.2 Eukaryotic translation initiation factor 3 subunit E [Brugia malayi]
|
KAH7727700.1 Eukaryotic translation initiation factor 3 subunit E [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003743|GO:0005737|GO:0005852
|
GO:0008150_0.946|GO:0005575_0.917|GO:0110165_0.906|GO:0009987_0.895|GO:0005622_0.866|GO:0005737_0.686|GO:0043226_0.685|GO:0008152_0.630|GO:0044238_0.621|GO:0044237_0.609|GO:0043170_0.607|GO:0009058_0.602|GO:0003674_0.601|GO:0044249_0.588|GO:0019538_0.587|GO:0009059_0.581|GO:0065007_0.581|GO:0050789_0.573|GO:0010467_0.567|GO:0032991_0.558|GO:0043229_0.549|GO:0050794_0.549|GO:0005488_0.541|GO:0006412_0.529|GO:0006414_0.529|GO:0016020_0.510
|
IPR000717+223-398_312-394_327-412+|IPR016650+1-427_1-442_2-425_3-425+|IPR019010+5-139_5-140+|IPR036390+321-396+
|
SM00088+327-412+|SM01186+5-140+
|
PF01399+312-394+PCI_domain|PF09440+5-139+eIF3_subunit_6_N_terminal_domain
|
— |
PTHR10317+1-427+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
444-444
|
1.000
|
1-443
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
52239.000
|
5.843
|
-4.500
|
31.306
|
12.613
|
49.775
|
50.225
|
15.766
|
15.541
|
38.063
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkturquoise
|
2446.870
|
792.036
|
1484.575
|
2692.152
|
2950.053
|
2860.809
|
2131.794
|
1772.520
|
4962.788
|
1476.489
|
2970.617
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
1.628
|
0.967
|
0.100
|
— |
-0.414
|
-0.795
|
0.409
|
— | — | — | — | — |
No JSON data available for plots.