Hg_chrom7_TN10mRNA_13969
Organism: Heterodera glycines Gene Locus: chr7:4887130-4892949 Feature type: polypeptideProtein Sequence
Length: 626
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.929 | 0.817 | 0.784 | 0.881 | 0.852 | 2.253 | 0.628 | 3.115 | 0.568 | 1.274 | 0.629 | 1.879 | 1.109 | 1.382 | 1.011 | 1.415 | 0.524 | 0.75 | 0.123 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13183
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.536
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.825
|
0.162
|
0.018
|
0.397
|
0.058
|
0.098
|
0.084
|
0.007
|
0.125
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004570
|
2.000
|
1.000
|
Hsc_gene_10635.t2
|
Hsc_gene_10634.t1;Hsc_gene_10635.t1;Hsc_gene_10635.t2
|
— |
Q08882.1 Probable nuclear hormone receptor HR3 [Manduca sexta]
|
KAI3413780.1 receptor [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.975|GO:0065007_0.911|GO:0009987_0.909|GO:0050789_0.909|GO:0050794_0.909|GO:0003674_0.842|GO:0005488_0.842|GO:0008152_0.836|GO:0019222_0.836|GO:0031323_0.836|GO:0044237_0.836|GO:0043170_0.832|GO:0060255_0.832|GO:0003676_0.831|GO:0097159_0.831|GO:0009058_0.825|GO:0009059_0.825|GO:0009889_0.825|GO:0010556_0.825|GO:0031326_0.825|GO:0044249_0.825|GO:0010467_0.823|GO:0010468_0.822|GO:0003677_0.812|GO:0044238_0.802|GO:0080090_0.802|GO:0005575_0.795|GO:0110165_0.792|GO:0043565_0.759|GO:0005622_0.752|GO:0003690_0.749|GO:1990837_0.749|GO:0006139_0.748|GO:0016070_0.748|GO:0019219_0.748|GO:0032774_0.748|GO:0034654_0.748|GO:0051252_0.748|GO:0090304_0.748|GO:0141187_0.748|GO:0006351_0.741|GO:2001141_0.739|GO:0006355_0.733|GO:0043226_0.726|GO:0032501_0.724|GO:0043229_0.719|GO:0032502_0.710|GO:0050896_0.685|GO:0016020_0.680|GO:0000976_0.679|GO:0001067_0.679|GO:0048856_0.671|GO:0048518_0.656|GO:0005634_0.654|GO:0043227_0.654|GO:0043231_0.654|GO:0007275_0.618|GO:0048519_0.611|GO:0048522_0.607|GO:0048523_0.600|GO:0006357_0.589|GO:0006366_0.589|GO:0000977_0.588|GO:0009893_0.578|GO:0010604_0.575|GO:0009891_0.573|GO:0031325_0.573|GO:0031328_0.573|GO:0140110_0.570|GO:0010557_0.564|GO:0003700_0.549|GO:0048731_0.538|GO:0043228_0.531|GO:0043232_0.531|GO:0045935_0.527|GO:0051254_0.527|GO:0045893_0.514|GO:1902680_0.514|GO:0051716_0.506
|
IPR000536+377-606_432-584+|IPR001628+71-142_71-146_73-141_74-90_74-100_90-105_123-131_131-139+|IPR001723+135-145_424-445_445-461_513-528_565-582+|IPR013088+65-173+|IPR035500+144-590_353-623+|IPR044101+67-161+
|
SM00399+71-142+
|
PF00104+432-584+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+73-141+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000003+66-171+Nuclear_orphan_receptor_ROR-beta
|
PTHR45805+15-621+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-70;177-309
|
2.000
|
71-176;310-626
|
7xvn_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
69875.850
|
7.461
|
17.500
|
24.760
|
12.939
|
50.160
|
49.840
|
15.335
|
9.425
|
48.882
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
820.467
|
378.620
|
297.743
|
461.042
|
777.205
|
738.072
|
2456.049
|
237.692
|
175.223
|
1453.219
|
905.506
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.578
|
0.147
|
0.741
|
0.720
|
— |
1.745
|
-1.746
|
3.514
|
-3.161
|
— | — | — | — |
No JSON data available for plots.