Hg_chrom7_TN10mRNA_13970
Organism: Heterodera glycines Gene Locus: chr7:4887134-4891808 Feature type: polypeptideProtein Sequence
Length: 788
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.048 | 0.826 | 0.761 | 0.744 | 0.804 | 1.822 | 0.619 | 2.475 | 0.79 | 1.2 | 0.731 | 1.12 | 1.093 | 1.367 | 0.932 | 1.777 | 0.645 | 0.827 | 0.098 | 0.672 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13183
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.536
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
17-51
|
0.978
|
— | — |
0.000
|
— | — |
0.829
|
0.160
|
0.023
|
0.388
|
0.063
|
0.081
|
0.064
|
0.011
|
0.139
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004570
|
2.000
|
1.000
|
Hsc_gene_10635.t2
|
Hsc_gene_10635.t1;Hsc_gene_10635.t2
|
— |
P41828.2 Nuclear hormone receptor family member nhr-23 [Caenorhabditis elegans]
|
KAI3413780.1 receptor [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.974|GO:0065007_0.928|GO:0009987_0.925|GO:0050789_0.925|GO:0050794_0.925|GO:0005575_0.816|GO:0003674_0.815|GO:0005488_0.815|GO:0008152_0.815|GO:0009058_0.815|GO:0009059_0.815|GO:0010467_0.815|GO:0043170_0.815|GO:0044237_0.815|GO:0044249_0.815|GO:0110165_0.815|GO:0019222_0.808|GO:0031323_0.808|GO:0003676_0.804|GO:0097159_0.804|GO:0060255_0.802|GO:0009889_0.794|GO:0010556_0.794|GO:0031326_0.794|GO:0010468_0.791|GO:0003677_0.783|GO:0005622_0.772|GO:0044238_0.772|GO:0080090_0.772|GO:0032501_0.765|GO:0043565_0.751|GO:0006139_0.742|GO:0016070_0.742|GO:0032774_0.742|GO:0034654_0.742|GO:0090304_0.742|GO:0141187_0.742|GO:0003690_0.738|GO:1990837_0.738|GO:0006351_0.733|GO:0032502_0.732|GO:0043226_0.731|GO:0043229_0.722|GO:0019219_0.716|GO:0051252_0.716|GO:2001141_0.705|GO:0050896_0.703|GO:0006355_0.701|GO:0016020_0.701|GO:0048856_0.692|GO:0007275_0.680|GO:0048518_0.666|GO:0005634_0.665|GO:0043227_0.665|GO:0043231_0.665|GO:0000976_0.643|GO:0001067_0.643|GO:0048522_0.638|GO:0048731_0.597|GO:0009893_0.586|GO:0031325_0.582|GO:0010604_0.581|GO:0009891_0.580|GO:0031328_0.580|GO:0048519_0.577|GO:0010557_0.572|GO:0048523_0.567|GO:0006357_0.554|GO:0006366_0.554|GO:0051716_0.542|GO:0140110_0.536|GO:0045935_0.534|GO:0051254_0.532|GO:0000977_0.527|GO:0045893_0.521|GO:1902680_0.521|GO:0003700_0.511|GO:0048513_0.510
|
IPR000536+539-768_594-746+|IPR001628+233-304_233-308_235-303_236-252_236-262_252-267_285-293_293-301+|IPR001723+297-307_586-607_607-623_675-690_727-744+|IPR013088+229-335+|IPR035500+306-752_515-785+|IPR044101+230-323+
|
SM00399+233-304+
|
PF00104+594-746+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+235-303+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000003+228-333+Nuclear_orphan_receptor_ROR-beta
|
PTHR45805+143-783+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31;339-471
|
2.000
|
32-338;472-788
|
7xvn_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.874
|
86186.030
|
7.920
|
22.500
|
23.350
|
11.294
|
50.381
|
49.619
|
14.340
|
9.010
|
53.046
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
820.467
|
378.620
|
297.743
|
461.042
|
777.205
|
738.072
|
2456.049
|
237.692
|
175.223
|
1453.219
|
905.506
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.578
|
0.147
|
0.741
|
0.720
|
— |
1.745
|
-1.746
|
3.514
|
-3.161
|
— | — | — | — |
No JSON data available for plots.