Hg_chrom7_TN10mRNA_13973
Organism: Heterodera glycines Gene Locus: chr7:4909829-4910401 Feature type: polypeptideProtein Sequence
Length: 158
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.81 | 1.03 | 0.575 | 0.873 | 0.844 | 1.461 | 0.98 | 1.582 | 1.688 | 1.625 | 1.055 | 1.117 | 0.703 | 0.974 | 1.162 | 0.904 | 0.519 | 0.959 | 0.487 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13186
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.513
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-21
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.149
|
0.942
|
0.027
|
0.252
|
0.029
|
0.069
|
0.100
|
0.060
|
0.065
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011208
|
1.000
|
1.000
|
Hsc_gene_10625.t2
|
Hsc_gene_10625.t1;Hsc_gene_10625.t2
|
— |
P62958.2 Adenosine 5'-monophosphoramidase HINT1 [Bos taurus]
|
KAI3413795.1 Histidine triad nucleotide-binding protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0005575_0.892|GO:0110165_0.889|GO:0005622_0.830|GO:0008150_0.774|GO:0016020_0.757|GO:0043226_0.731|GO:0043229_0.722|GO:0005737_0.716|GO:0043227_0.697|GO:0043231_0.684|GO:0003674_0.678|GO:0008152_0.584|GO:0044238_0.574|GO:0009987_0.571|GO:0003824_0.551|GO:0016787_0.520
|
IPR001310+33-158_50-66_71-89_138-148+|IPR011146+50-158_56-152+|IPR019808+131-149+|IPR036265+31-158_46-157+
|
— |
PF01230+56-152+HIT_domain
|
G3DSA:3.30.428.10:FF:000005+33-158+Histidine_triad_nucleotide-binding_protein_1
|
PTHR23089+33-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-158
|
3o1z_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
17489.400
|
9.766
|
9.500
|
24.051
|
8.861
|
43.671
|
56.329
|
15.823
|
8.228
|
46.203
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
midnightblue
|
1400.393
|
1124.113
|
1369.143
|
1799.195
|
2233.526
|
1726.588
|
1690.057
|
1831.400
|
465.724
|
1362.167
|
977.977
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.541
|
0.502
|
0.280
|
-0.356
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.