Hg_chrom7_TN10mRNA_13975
Organism: Heterodera glycines Gene Locus: chr7:4913744-4916617 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.308 | 1.017 | 0.682 | 0.754 | 0.625 | 1.683 | 0.707 | 0.938 | 0.764 | 1.309 | 0.331 | 1.103 | 2.604 | 1.082 | 1.084 | 1.116 | 0.512 | 1.136 | 1.202 | 0.827 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13188
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.867
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.147
|
0.155
|
0.012
|
0.192
|
0.441
|
0.524
|
0.592
|
0.010
|
0.487
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011209
|
1.000
|
1.000
|
Hsc_gene_10623.t1
|
Hsc_gene_10623.t1
|
— |
O77735.1 Secretory carrier-associated membrane protein 1 [Sus scrofa]
|
KAI6181979.1 Secretory carrier-associated membrane protein [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015031|GO:0016020
|
GO:0005575_0.942|GO:0110165_0.940|GO:0016020_0.906|GO:0008150_0.881|GO:0071944_0.877|GO:0005886_0.868|GO:0009987_0.844|GO:0051179_0.818|GO:0006810_0.808|GO:0051234_0.808|GO:0005622_0.740|GO:0043226_0.716|GO:0043229_0.699|GO:0043227_0.697|GO:0043231_0.686|GO:0005737_0.670|GO:0005773_0.670|GO:0012505_0.647|GO:0031982_0.533|GO:0031090_0.531|GO:0016192_0.529
|
IPR007273+7-300_102-274+
|
— |
PF04144+102-274+SCAMP_family
|
— |
PTHR10687+7-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-98
|
1.000
|
99-320
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
35646.800
|
7.305
|
3.000
|
16.875
|
15.625
|
38.750
|
61.250
|
9.375
|
7.500
|
51.562
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
tan
|
1234.973
|
1839.097
|
1793.603
|
1226.905
|
1233.557
|
1489.089
|
2608.804
|
1899.055
|
1053.172
|
79.338
|
496.695
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.265
|
-0.721
|
-0.439
|
— |
0.286
|
0.820
|
0.247
|
0.600
|
3.576
|
— |
4.965
|
— | — |
No JSON data available for plots.