Hg_chrom7_TN10mRNA_13977
Organism: Heterodera glycines Gene Locus: chr7:4924984-4936883 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.351 | 0.901 | 1.024 | 0.243 | 3.873 | 1.354 | 0.126 | 0.176 | 0.469 | 1.427 | 1.44 | 2.071 | 0.196 | 0.0 | 1.725 | 0.503 | 0.462 | 0.854 | 0.0 | 0.414 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13190
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.399
|
0.264
|
0.007
|
0.745
|
0.068
|
0.154
|
0.185
|
0.026
|
0.287
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001400
|
1.000
|
4.000
|
Hsc_gene_10622.t1;Hsc_gene_10622.t2;Hsc_gene_10622.t3;Hsc_gene_10622.t4
|
Hsc_gene_10622.t3
|
Y105E8B.1f;Y105E8B.1k;Y105E8B.1l;Y105E8B.1m;Y105E8B.1n
|
Q25632.1 Tropomyosin [Onchocerca volvulus]
|
AAQ12016.1 tropomyosin [Heterodera glycines]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.764|GO:0032501_0.584|GO:0005575_0.560|GO:0110165_0.552|GO:0005622_0.544
|
IPR000533+48-283_84-101_120-140_145-173_175-198_231-256_232-240+
|
— |
PF00261+48-283+Tropomyosin
|
G3DSA:1.20.5.170:FF:000001+88-227+Tropomyosin_alpha-1_chain_isoform_1|G3DSA:1.20.5.170:FF:000005+228-283+Tropomyosin_alpha-1_chain|G3DSA:1.20.5.340:FF:000001+1-81+Tropomyosin_alpha-1_chain_isoform_2
|
PTHR19269+1-282+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-199
|
1.000
|
200-284
|
1c1g_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.940
|
33226.000
|
4.306
|
-30.500
|
47.183
|
2.465
|
62.676
|
37.324
|
18.310
|
28.873
|
34.859
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
25807.613
|
37299.470
|
50351.257
|
14602.655
|
5957.100
|
19131.431
|
4145.222
|
127382.158
|
7344.255
|
10324.131
|
9047.041
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.204
|
-1.490
|
-1.678
|
-1.325
|
1.697
|
-2.195
|
2.635
|
-4.800
|
— |
1.146
|
— | — | — |
No JSON data available for plots.