Hg_chrom7_TN10mRNA_13981
Organism: Heterodera glycines Gene Locus: chr7:4940072-4940765 Feature type: polypeptideProtein Sequence
Length: 132
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.881 | 0.705 | 0.689 | 0.261 | 0.758 | 1.943 | 0.631 | 1.894 | 1.01 | 1.433 | 0.115 | 2.228 | 1.473 | 0.728 | 2.01 | 1.19 | 1.242 | 0.803 | 0.583 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13192
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— |
RRIADSTPKLRYRRHHR
|
49-89
|
0.999
|
19-78
|
0.717
|
— | — |
0.000
|
— | — |
0.133
|
0.032
|
0.054
|
0.236
|
0.351
|
0.707
|
0.493
|
0.184
|
0.421
|
0.278
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011210
|
1.000
|
1.000
|
Hsc_gene_10618.t1
|
Hsc_gene_10618.t1
|
— | — |
KAI3413799.1 hypothetical protein GPALN_011280 [Globodera pallida]
|
MCI5551486
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-132
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
15100.210
|
9.624
|
5.500
|
22.727
|
12.879
|
49.242
|
50.758
|
14.394
|
8.333
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
darkturquoise
|
737.202
|
96.808
|
1038.233
|
835.583
|
348.158
|
430.820
|
371.855
|
2540.921
|
932.598
|
402.416
|
629.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.194
|
2.973
|
-0.204
|
-1.296
|
0.323
|
— |
2.459
|
-2.632
|
— | — | — | — | — |
No JSON data available for plots.